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Summary[edit source | edit]

  • pan ID?: SAUPAN002772000
  • symbol?:
  • description?: putative lipoprotein (pseudogene)
  • strand?: -
  • coordinates?: 3243944..3244660
  • synteny block?: BlockID0019750
  • occurrence?: in 75% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0763
    08BA02176:
    11819-97:
    MS7_0835
    71193:
    ECT-R 2:
    ECTR2_735
    ED133:
    SAOV_0824c
    ED98:
    SAAV_0753
    HO 5096 0412:
    JH1:
    SaurJH1_0825
    JH9:
    SaurJH9_0809
    JKD6008:
    SAA6008_00799
    JKD6159:
    SAA6159_00740
    LGA251:
    SARLGA251_07160
    M013:
    M013TW_0774
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS0749
    Mu3:
    SAHV_0804
    Mu50:
    SAV0808
    MW2:
    MW0761
    RF122:
    SAB0741c
    ST398:
    T0131:
    TCH60:
    TW20:
    SATW20_08590
    USA300_TCH1516:
    USA300HOU_0815
    VC40:
    SAVC_03565

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
    N315            MKKVMGILLASTLILGACGHHQDSAKKESASHKKKENDNEELNEELKEFKSKKNMDIKIK
    NCTC8325        MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
    Newman          MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
    USA300_FPR3757  MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
                    *****************************:******************************

    COL             GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
    N315            GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
    NCTC8325        GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
    Newman          GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
    USA300_FPR3757  GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
                    ************************************************************

    COL             KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
    N315            KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
    NCTC8325        KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
    Newman          KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
    USA300_FPR3757  KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
                    ************************************************************

    COL             TVDSKSFKFSKLKTEDFSHRAETREEAEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
    N315            TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSSLD
    NCTC8325        TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
    Newman          TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
    USA300_FPR3757  TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
                    **************************.******************************.**

    COL             EV
    N315            EV
    NCTC8325        EV
    Newman          EV
    USA300_FPR3757  EV
                    **