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Summary[edit source | edit]

  • pan ID?: SAUPAN002823000
  • symbol?:
  • description?: pseudogene
  • strand?: +
  • coordinates?: 3279982..3280722
  • synteny block?: BlockID0020140
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA0761 (truncated-SA)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0789
    08BA02176:
    C248_0903
    11819-97:
    MS7_0861
    71193:
    ST398NM01_0889
    ECT-R 2:
    ECTR2_761
    ED133:
    SAOV_0851
    ED98:
    SAAV_0780
    HO 5096 0412:
    SAEMRSA15_07360
    JH1:
    SaurJH1_0851
    JH9:
    SaurJH9_0834
    JKD6008:
    SAA6008_00825
    JKD6159:
    SAA6159_00765
    LGA251:
    SARLGA251_07400
    M013:
    M013TW_0800
    MRSA252:
    SAR0865
    MSHR1132:
    SAMSHR1132_07580
    MSSA476:
    SAS0774
    Mu3:
    SAHV_0830
    Mu50:
    SAV0834
    MW2:
    MW0787
    RF122:
    SAB0765
    ST398:
    SAPIG0889
    T0131:
    SAT0131_00909 (agrD)
    TCH60:
    HMPREF0772_12369
    TW20:
    SATW20_08830
    USA300_TCH1516:
    USA300HOU_0842
    VC40:
    SAVC_03695

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
    N315            MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLK
    NCTC8325        MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
    Newman          MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
    USA300_FPR3757  MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
                    ************************************************.***********

    COL             SFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
    N315            SFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNN
    NCTC8325        SFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
    Newman          SFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
    USA300_FPR3757  YFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
                     *********************:***********:*************************

    COL             INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
    N315            INSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
    NCTC8325        INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
    Newman          INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
    USA300_FPR3757  INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
                    *********************.**************************************

    COL             DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
    N315            DVLALWNKVNPSFALK----------------------FNH-------------------
    NCTC8325        DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
    Newman          DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
    USA300_FPR3757  DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
                    ****************                      **:                   

    COL             KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
    N315            ------------------SII---------------------------NNSS
    NCTC8325        KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
    Newman          KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
    USA300_FPR3757  KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
                                      ***                            :.*