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Summary[edit source | edit]

  • pan ID?: SAUPAN003019000
  • symbol?:
  • description?: conserved protein YunF
  • strand?: +
  • coordinates?: 3411558..3412427
  • synteny block?: BlockID0021270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0876
    08BA02176:
    C248_0921
    11819-97:
    MS7_0877
    71193:
    ST398NM01_0905
    ECT-R 2:
    ECTR2_777
    ED133:
    SAOV_0868
    ED98:
    SAAV_0882
    HO 5096 0412:
    SAEMRSA15_07520
    JH1:
    SaurJH1_0939
    JH9:
    SaurJH9_0920
    JKD6008:
    SAA6008_00873
    JKD6159:
    SAA6159_00781
    LGA251:
    SARLGA251_08400
    M013:
    M013TW_0841
    MRSA252:
    SAR0884
    MSHR1132:
    SAMSHR1132_07740
    MSSA476:
    SAS0792
    Mu3:
    SAHV_0916
    Mu50:
    SAV0921
    MW2:
    MW0804
    RF122:
    SAB0788
    ST398:
    SAPIG0905
    T0131:
    SAT0131_00952
    TCH60:
    HMPREF0772_12325
    TW20:
    SATW20_09220
    USA300_TCH1516:
    USA300HOU_0882
    VC40:
    SAVC_03785

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MINIGLTGWGDHYSLYEDLERQTDKLKTYAGHFPVVELDATYYAIQPERNILKWIKETPD
    N315            MINIGLTGWGDHYSLYEDLERQTDKLKTYAGHFPVVELDATYYAIQPERNILKWIKETPD
    NCTC8325        MINIGLTGWGDHYSLYEDLERQTDKLKTYAGHFPVVELDATYYAIQPERNILKWIKETPD
    Newman          MINIGLTGWGDHYSLYEDLERQTDKLKTYAGHFPVVELDATYYAIQPERNILKWIKETPD
    USA300_FPR3757  MINIGLTGWGDHYSLYEDLERQTDKLKTYAGHFPVVELDATYYAIQPERNILKWIKETPD
                    ************************************************************

    COL             TFEFVVKIHQALTLHADYKTFADTRQELFDQFKNMLEPLHTQKKLAMVLVQFPPWFDCNA
    N315            TFEFVVKIHQALTLHADYKTFADTRQELFDQFKNMLEPLHTQKKLAMVLVQFPPWFDCNA
    NCTC8325        TFEFVVKIHQALTLHADYKTFADTRQELFDQFKNMLEPLHTQKKLAMVLVQFPPWFDCNA
    Newman          TFEFVVKIHQALTLHADYKTFADTRQELFDQFKNMLEPLHTQKKLAMVLVQFPPWFDCNA
    USA300_FPR3757  TFEFVVKIHQALTLHADYKTFADTRQELFDQFKNMLEPLHTQKKLAMVLVQFPPWFDCNA
                    ************************************************************

    COL             QNIKYILYVRQQLQAFPMCVEFRHQSWFSDAFKEQTLAFLTEHQIIHAVVDEPQVKDGSV
    N315            QNIKYILYVRQQLQAFPMCVEFRHQSWFSDAFKEQTLAFLTEHQIIHAVVDEPQVKDGSV
    NCTC8325        QNIKYILYVRQQLQAFPMCVEFRHQSWFSDAFKEQTLAFLTEHQIIHAVVDEPQVKDGSV
    Newman          QNIKYILYVRQQLQAFPMCVEFRHQSWFSDAFKEQTLAFLTEHQIIHAVVDEPQVKDGSV
    USA300_FPR3757  QNIKYILYVRQQLQAFPMCVEFRHQSWFSDAFKEQTLAFLTEHQIIHAVVDEPQVKDGSV
                    ************************************************************

    COL             PLVNRITNEIAFVRYHGRNHYGWTKKDMSDQEWRDVRYLYDYNEQELIDLAQKAQILAQK
    N315            PLVNRITNEIAFVRYHGRNHYGWTKKDMSDQEWRDVRYLYDYNEQELIDLAQKAQILAQK
    NCTC8325        PLVNRITNEIAFVRYHGRNHYGWTKKDMSDQEWRDVRYLYDYNEQELIDLAQKAQILAQK
    Newman          PLVNRITNEIAFVRYHGRNHYGWTKKDMSDQEWRDVRYLYDYNEQELIDLAQKAQILAQK
    USA300_FPR3757  PLVNRITNEIAFVRYHGRNHYGWTKKDMSDQEWRDVRYLYDYNEQELIDLAQKAQILAQK
                    ************************************************************

    COL             AKKVYVIFNNNSGGHAANNAKTYQRLLNIEYEGLAPQQLKLF
    N315            AKKVYVIFNNNSGGHAANNAKTYQRLLNIEYEGLAPQQLKLF
    NCTC8325        AKKVYVIFNNNSGGHAANNAKTYQRLLNIEYEGLAPQQLKLF
    Newman          AKKVYVIFNNNSGGHAANNAKTYQRLLNIEYEGLAPQQLKLF
    USA300_FPR3757  AKKVYVIFNNNSGGHAANNAKTYQRLLNIEYEGLAPQQLKLF
                    ******************************************