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Summary[edit source | edit]

  • pan ID?: SAUPAN003263000
  • symbol?:
  • description?: LytR family transcriptional regulator
  • strand?: -
  • coordinates?: 3639301..3639771
  • synteny block?: BlockID0023470
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1009
    08BA02176:
    C248_1080
    11819-97:
    MS7_1012
    71193:
    ST398NM01_1052
    ECT-R 2:
    ECTR2_910
    ED133:
    SAOV_1001c
    ED98:
    SAAV_1019
    HO 5096 0412:
    SAEMRSA15_08860
    JH1:
    SaurJH1_1137
    JH9:
    SaurJH9_1114
    JKD6008:
    SAA6008_01010
    JKD6159:
    SAA6159_00911
    LGA251:
    SARLGA251_09690
    M013:
    M013TW_0986
    MRSA252:
    SAR1028
    MSHR1132:
    SAMSHR1132_09030
    MSSA476:
    SAS0990
    Mu3:
    SAHV_1047
    Mu50:
    SAV1055
    MW2:
    MW0938
    RF122:
    SAB0921c
    ST398:
    SAPIG1052
    T0131:
    SAT0131_01089
    TCH60:
    HMPREF0772_12179
    TW20:
    SATW20_10510
    USA300_TCH1516:
    USA300HOU_0999
    VC40:
    SAVC_04440

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDN
    N315            MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDN
    NCTC8325        MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDN
    Newman          MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDN
    USA300_FPR3757  MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDN
                    ************************************************************

    COL             PIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTD
    N315            PIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTD
    NCTC8325        PIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTD
    Newman          PIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTD
    USA300_FPR3757  PIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTD
                    ************************************************************

    COL             VNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
    N315            VNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
    NCTC8325        VNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
    Newman          VNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
    USA300_FPR3757  VNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
                    ************************************