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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003291000
- symbol?: thiW
- synonym:
- description?: ABC transporter ATP-binding protein
- ABC transporter ATP-binding protein
- CbiO-like ABC-type cobalt transport system, ATPase component, putative
- ABC superfamily ATP binding cassette transporter, ABC protein
- ABC transporter, ATP-binding protein
- ABC transporter family protein
- cation ABC transporter
- cation ATP-binding ABC transporter protein
- Duplicated ATPase component YkoD of energizingmodule of thiamin-regulated ECF transporter
- Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
- heme ABC transporter ATP-binding protein CcmA
- hydroxymethylpyrimidine transport ATP-binding protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3664839..3666059
- synteny block?: BlockID0023750
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1032
08BA02176:
C248_1102
11819-97:
MS7_1034
6850:
RSAU_000963
71193:
ST398NM01_1074
ECT-R 2:
ECTR2_932
ED133:
SAOV_1021c
ED98:
SAAV_1041
HO 5096 0412:
SAEMRSA15_09070
JH1:
SaurJH1_1158
JH9:
SaurJH9_1136
JKD6008:
SAA6008_01032 (ykoD)
JKD6159:
SAA6159_00932 (ykoD)
LGA251:
SARLGA251_09900 (ykoD)
M013:
M013TW_1009
MRSA252:
SAR1050
MSHR1132:
SAMSHR1132_09240
MSSA476:
SAS1012
Mu3:
SAHV_1068
Mu50:
SAV1076
MW2:
MW0959
RF122:
SAB0943c
ST398:
SAPIG1074
T0131:
SAT0131_01113
TCH60:
HMPREF0772_12157
TW20:
SATW20_10720 (ykoD)
USA300_TCH1516:
USA300HOU_1020
VC40:
SAVC_04545
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELP
N315 MLKVSDLRLKYPNGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELP
NCTC8325 MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELP
Newman MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELP
USA300_FPR3757 MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELP
************.***********************************************
COL MKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLN
N315 MKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQVPREDMDALIINALNMVNLN
NCTC8325 MKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLN
Newman MKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLN
USA300_FPR3757 MKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLN
****************************************:*******************
COL VTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQT
N315 VTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQT
NCTC8325 VTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQT
Newman VTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQT
USA300_FPR3757 VTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQT
************************************************************
COL VVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPS
N315 VVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPS
NCTC8325 VVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPS
Newman VVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPS
USA300_FPR3757 VVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPS
************************************************************
COL RVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQL
N315 RVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQL
NCTC8325 RVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQL
Newman RVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQL
USA300_FPR3757 RVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQL
************************************************************
COL IKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDET
N315 IKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDET
NCTC8325 IKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDET
Newman IKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDET
USA300_FPR3757 IKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDET
************************************************************
COL IQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIK
N315 IQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIK
NCTC8325 IQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIK
Newman IQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIK
USA300_FPR3757 IQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIK
************************************************************
COL LFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
N315 LFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
NCTC8325 LFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
Newman LFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
USA300_FPR3757 LFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
**********************************************