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Summary[edit source | edit]

  • pan ID?: SAUPAN003321000
  • symbol?:
  • description?: protein //

      descriptions from strain specific annotations:

    • protein //
    • putative transcriptional regulator
  • strand?: +
  • coordinates?: 3689473..3689806
  • synteny block?: BlockID0024050
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1054
    08BA02176:
    C248_1124
    11819-97:
    MS7_1054
    71193:
    ST398NM01_1094
    ECT-R 2:
    ECTR2_952
    ED133:
    SAOV_1041
    ED98:
    SAAV_1062
    HO 5096 0412:
    SAEMRSA15_09270
    JH1:
    SaurJH1_1179
    JH9:
    SaurJH9_1157
    JKD6008:
    SAA6008_01052
    JKD6159:
    SAA6159_00953
    LGA251:
    SARLGA251_10100
    M013:
    M013TW_1029
    MRSA252:
    SAR1071
    MSHR1132:
    SAMSHR1132_09440
    MSSA476:
    SAS1032
    Mu3:
    SAHV_1089
    Mu50:
    SAV1097
    MW2:
    MW0980
    RF122:
    SAB0963
    ST398:
    SAPIG1094
    T0131:
    SAT0131_01135 (asp23)
    TCH60:
    HMPREF0772_12135
    TW20:
    SATW20_10920
    USA300_TCH1516:
    USA300HOU_1040
    VC40:
    SAVC_04645

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MEYEYPIDLDWSNEEMISVINFFNHVEKYYESGVTAGDFMGAYKRFKEIVPAKAEEKQIF
    N315            MEYEYPIDLDWSNEEMISVINFFNHVEKYYESGVTAGDFMGAYKRFKEIVPAKAEEKQIF
    NCTC8325        MEYEYPIDLDWSNEEMISVINFFNHVEKYYESGVTAGDFMGAYKRFKEIVPAKAEEKQIF
    Newman          MEYEYPIDLDWSNEEMISVINFFNHVEKYYESGVTAGDFMGAYKRFKEIVPAKAEEKQIF
    USA300_FPR3757  MEYEYPIDLDWSNEEMISVINFFNHVEKYYESGVTAGDFMGAYKRFKEIVPAKAEEKQIF
                    ************************************************************

    COL             NTFEKSSGYNSYKAVQDVKTHSEEQRVTAKK
    N315            NTFEKSSGYNSYKAVQDVKTHSEEQRVTAKK
    NCTC8325        NTFEKSSGYNSYKAVQDVKTHSEEQRVTAKK
    Newman          NTFEKSSGYNSYKAVQDVKTHSEEQRVTAKK
    USA300_FPR3757  NTFEKSSGYNSYKAVQDVKTHSEEQRVTAKK
                    *******************************