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Summary[edit source | edit]

  • pan ID?: SAUPAN003338000
  • symbol?:
  • description?: hypothetical protein
  • strand?: -
  • coordinates?: 3703656..3704138
  • synteny block?: BlockID0024220
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1068
    08BA02176:
    C248_1138
    11819-97:
    MS7_1068
    71193:
    ST398NM01_1108
    ECT-R 2:
    ECTR2_966
    ED133:
    SAOV_1053c
    ED98:
    SAAV_1077
    HO 5096 0412:
    SAEMRSA15_09410
    JH1:
    SaurJH1_1193
    JH9:
    SaurJH9_1171
    JKD6008:
    SAA6008_01066
    JKD6159:
    SAA6159_00966
    LGA251:
    SARLGA251_10240
    M013:
    M013TW_1043
    MRSA252:
    SAR1085
    MSHR1132:
    SAMSHR1132_09580
    MSSA476:
    SAS1046
    Mu3:
    SAHV_1103
    Mu50:
    SAV1111
    MW2:
    MW0994
    RF122:
    SAB0976c
    ST398:
    SAPIG1108
    T0131:
    SAT0131_01150
    TCH60:
    HMPREF0772_12121
    TW20:
    SATW20_11060
    USA300_TCH1516:
    USA300HOU_1049
    VC40:
    SAVC_04720

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MIQIKGAVKFPITLDSTTWIFDDRKVSIEDLEKGVFDGSKPIDFEDNHEWNRAILEGQTN
    N315            MIQIKGAVKFPITLDSTTWIFDDRKVSIEDLEKGVFDGSKPIDFEDNHEWNRAILEGQTN
    NCTC8325        MIQIKGAVKFPITLDSTTWIFDDRKVSIEDLEKGVFDGSKPIDFEDNHEWNRAILEGQTN
    Newman          MIQIKGAVKFPITLDSTTWIFDDRKVSIEDLEKGVFDGSKPIDFEDNHEWNRAILEGQTN
    USA300_FPR3757  MIQIKGAVKFPITLDSTTWIFDDRKVSIEDLEKGVFDGSKPIDFEDNHEWNRAILEGQTN
                    ************************************************************

    COL             PPTLNSEIKYKKRAMLEGSFVINMTPFFKHSEPHDSATTIRLSNEHDHLDIPIDLLPYLF
    N315            PPTLNSEIKYKKRAMLEGSFVINMTPFFKHSEPHDSATTIRLSNEHDHLDIPIDLLPYLF
    NCTC8325        PPTLNSEIKYKKRAMLEGSFVINMTPFFKHSEPHDSATTIRLSNEHDHLDIPIDLLPYLF
    Newman          PPTLNSEIKYKKRAMLEGSFVINMTPFFKHSEPHDSATTIRLSNEHDHLDIPIDLLPYLF
    USA300_FPR3757  PPTLNSEIKYKKRAMLEGSFVINMTPFFKHSEPHDSATTIRLSNEHDHLDIPIDLLPYLF
                    ************************************************************

    COL             FQFAKDGKRLYSDNGVDSFIYNQEDGYSYRINHVTHIEVI
    N315            FQFAKDGKRLYSDNGVDSFIYNQEDGYSYRINHVTHIEVI
    NCTC8325        FQFAKDGKRLYSDNGVDSFIYNQEDGYSYRINHVTHIEVI
    Newman          FQFAKDGKRLYSDNGVDSFIYNQEDGYSYRINHVTHIEVI
    USA300_FPR3757  FQFAKDGKRLYSDNGVDSFIYNQEDGYSYRINHVTHIEVI
                    ****************************************