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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003346000
- symbol?: —
- synonym:
- description?: CAP domain-containing protein
- CAP domain-containing protein
- putative SCP-domain protein
- Allergen V5/Tpx-1 like protein
- allergen V5/Tpx-1 related protein
- cysteine-rich secretory family protein
- membrane protein
- SCP/PR1-like extracellular protein
- SCP-like extracellular family protein
- SCP-like extracellular protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3714029..3715069
- synteny block?: BlockID0024300
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1075
08BA02176:
C248_1145
11819-97:
MS7_1075
6850:
RSAU_001003
71193:
ST398NM01_1115
ECT-R 2:
ECTR2_973
ED133:
SAOV_1060
ED98:
SAAV_1085
HO 5096 0412:
SAEMRSA15_09480
JH1:
SaurJH1_1200
JH9:
SaurJH9_1178
JKD6008:
SAA6008_01073
JKD6159:
SAA6159_00973
LGA251:
SARLGA251_10310
M013:
M013TW_1050
MRSA252:
SAR1092
MSHR1132:
SAMSHR1132_09650
MSSA476:
SAS1053
Mu3:
SAHV_1110
Mu50:
SAV1118
MW2:
MW1001
RF122:
SAB0983
ST398:
SAPIG1115
T0131:
SAT0131_01157
TCH60:
HMPREF0772_12114
TW20:
SATW20_11130
USA300_TCH1516:
USA300HOU_1056
VC40:
SAVC_04755
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ----------------------------------------------MNKSNNHAENPKPK
N315 MKKLIIRVVGVLFLVGFLIYLFYSPRLKFDVLENPNKGNKVNRSEQVNKSNNHAENPKPK
NCTC8325 MKKLIIRVVGVLFLVGFLIYLFYSPRLKFDVLENPNKGNKVNRSEQVNKSNNHAENPKPK
Newman MKKLIIRVVGVLFLVGFLIYLFYSPRLKFDVLENPNKGNKVNRSEQVNKSNNHAENPKPK
USA300_FPR3757 MKKLIIRVVGVLFLVGFLIYLFYSPRLKFDVLENPNKGNKVNRSEQVNKSNNHAENPKPK
:*************
COL EGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGE
N315 EGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGE
NCTC8325 EGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGE
Newman EGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGE
USA300_FPR3757 EGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGE
************************************************************
COL KVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVY
N315 KVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVY
NCTC8325 KVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVY
Newman KVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVY
USA300_FPR3757 KVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVY
************************************************************
COL SDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNKRPVEQNPNQLISLYEVTNEMRK
N315 SDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNKRPVEQNPNQLISLYEVTNEMRK
NCTC8325 SDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNKRPVEQNPNQLISLYEVTNEMRK
Newman SDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNKRPVEQNPNQLISLYEVTNEMRK
USA300_FPR3757 SDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNKRPVEQNPNQLISLYEVTNEMRK
************************************************************
COL LKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYA
N315 LKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYA
NCTC8325 LKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYA
Newman LKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYA
USA300_FPR3757 LKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYA
************************************************************
COL FNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLIFLEK
N315 FNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLIFLEK
NCTC8325 FNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLIFLEK
Newman FNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLIFLEK
USA300_FPR3757 FNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLIFLEK
*********************************************