From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN003349000
  • symbol?:
  • synonym:
  • description?: putative DUF2129-containing protein

      descriptions from strain specific annotations:

    • putative DUF2129-containing protein
    • YlbG family protein
    • putative Cytosolic Protein
  • strand?: +
  • coordinates?: 3716989..3717243
  • synteny block?: BlockID0024330
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1078
    08BA02176:
    C248_1148
    11819-97:
    MS7_1078
    6850:
    RSAU_001006
    71193:
    ST398NM01_1118
    ECT-R 2:
    ECTR2_976
    ED133:
    SAOV_1063
    ED98:
    SAAV_1088
    HO 5096 0412:
    SAEMRSA15_09510
    JH1:
    SaurJH1_1203
    JH9:
    SaurJH9_1181
    JKD6008:
    SAA6008_01076
    JKD6159:
    SAA6159_00976
    LGA251:
    SARLGA251_10340
    M013:
    M013TW_1053
    MRSA252:
    SAR1095
    MSHR1132:
    SAMSHR1132_09680
    MSSA476:
    SAS1056
    Mu3:
    SAHV_1113
    Mu50:
    SAV1122
    MW2:
    MW1004
    RF122:
    SAB0986
    ST398:
    SAPIG1118
    T0131:
    SAT0131_01160
    TCH60:
    HMPREF0772_12111
    TW20:
    SATW20_11160
    USA300_TCH1516:
    USA300HOU_1059
    VC40:
    SAVC_04770

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MNLIPRTSIVVYLKHMKHERQIRKYGHIVHSNRDRKFVIMYVNEQDVDQIVHKLMQLKYV
    N315            MNLIPRTSIVVYLKHMKHERQIRKYGHIVHSNRDRKFVIMYVNEQDVDQIVHKLMQLKYV
    NCTC8325        MNLIPRTSIVVYLKHMKHERQIRKYGHIVHSNRDRKFVIMYVNEQDVDQIVHKLMQLKYV
    Newman          MNLIPRTSIVVYLKHMKHERQIRKYGHIVHSNRDRKFVIMYVNEQDVDQIVHKLMQLKYV
    USA300_FPR3757  MNLIPRTSIVVYLKHMKHERQIRKYGHIVHSNRDRKFVIMYVNEQDVDQIVHKLMQLKYV
                    ************************************************************

    COL             RHIDGSPYKYLKKTYEKEKHEIYN
    N315            RHIDGSPYKYLKKTYEKEKHEIYN
    NCTC8325        RHIDGSPYKYLKKTYEKEKHEIYN
    Newman          RHIDGSPYKYLKKTYEKEKHEIYN
    USA300_FPR3757  RHIDGSPYKYLKKTYEKEKHEIYN
                    ************************