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Summary[edit source | edit]

  • pan ID?: SAUPAN003529000
  • symbol?: trmD
  • description?: tRNA (guanine-N(1)-)-methyltransferase

      descriptions from strain specific annotations:

    • tRNA (guanine-N(1)-)-methyltransferase
    • tRNA (guanine-N1)-methyltransferase
    • tRNA (Guanine37-N1) -methyltransferase
    • putative tRNA (guanine-7-)-methyltransferase
    • tRNA methyltransferase
    • tRNA guanine-N(1)-methyltransferase
  • strand?: +
  • coordinates?: 3868267..3869004
  • synteny block?: BlockID0026070
  • occurrence?: in 97% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1256 (trmD)
    N315:
    SA1083 (trmD)
    NCTC8325:
    Newman:
    NWMN_1150 (trmD)
    USA300_FPR3757:
    04-02981:
    SA2981_1198 (trmD)
    08BA02176:
    C248_1271 (trmD)
    11819-97:
    MS7_1198 (trmD)
    71193:
    ST398NM01_1240
    ECT-R 2:
    ECTR2_1096 (trmD)
    ED133:
    SAOV_1243 (trmD)
    ED98:
    SAAV_1213 (trmD)
    HO 5096 0412:
    SAEMRSA15_10730 (trmD)
    JH1:
    SaurJH1_1324 (trmD)
    JH9:
    SaurJH9_1299 (trmD)
    JKD6008:
    SAA6008_01195 (trmD)
    JKD6159:
    SAA6159_01093 (trmD)
    LGA251:
    SARLGA251_11510 (trmD)
    M013:
    M013TW_1178
    MRSA252:
    SAR1216 (trmD)
    MSHR1132:
    SAMSHR1132_10830
    MSSA476:
    SAS1174 (trmD)
    Mu3:
    SAHV_1230 (trmD)
    Mu50:
    SAV1240 (trmD)
    MW2:
    MW1123 (trmD)
    RF122:
    SAB1104 (trmD)
    ST398:
    SAPIG1240 (trmD)
    T0131:
    SAT0131_01290
    TCH60:
    HMPREF0772_11991 (trmD)
    TW20:
    SATW20_12340 (trmD)
    USA300_TCH1516:
    VC40:
    SAVC_05365 (trmD)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
    N315            MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
    NCTC8325        MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
    Newman          MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
    USA300_FPR3757  MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGM
                    ************************************************************

    COL             VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
    N315            VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
    NCTC8325        VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
    Newman          VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
    USA300_FPR3757  VLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERI
                    ************************************************************

    COL             RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
    N315            RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
    NCTC8325        RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
    Newman          RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
    USA300_FPR3757  RTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYT
                    ************************************************************

    COL             RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
    N315            RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNEDKQILERYKI
    NCTC8325        RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
    Newman          RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
    USA300_FPR3757  RPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKI
                    ************************************************* **********

    COL             GLKKG
    N315            GLKKG
    NCTC8325        GLKKG
    Newman          GLKKG
    USA300_FPR3757  GLKKG
                    *****