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Summary[edit source | edit]

  • pan ID?: SAUPAN003550000
  • symbol?: xerC
  • description?: site-specific recombinase XerC

      descriptions from strain specific annotations:

    • site-specific recombinase XerC
    • site-specific recombinase XerC homologue
    • tyrosine recombinase XerC
    • Site-specific tyrosine recombinase
    • putative integrase/recombinase
    • integrase/recombinase (XerC/CodV family)
  • strand?: +
  • coordinates?: 3886928..3887824
  • synteny block?: BlockID0026270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1269 (xerC)
    N315:
    SA1095 (xerC)
    NCTC8325:
    Newman:
    NWMN_1162 (xerC)
    USA300_FPR3757:
    04-02981:
    SA2981_1210 (xerC)
    08BA02176:
    C248_1283
    11819-97:
    MS7_1210 (xerC)
    71193:
    ST398NM01_1254
    ECT-R 2:
    ECTR2_1108 (xerC)
    ED133:
    SAOV_1254
    ED98:
    SAAV_1226 (xerC)
    HO 5096 0412:
    SAEMRSA15_10850
    JH1:
    SaurJH1_1337
    JH9:
    SaurJH9_1312
    JKD6008:
    SAA6008_01207 (xerC)
    JKD6159:
    SAA6159_01107 (xerC)
    LGA251:
    SARLGA251_11630
    M013:
    M013TW_1192
    MRSA252:
    SAR1228
    MSHR1132:
    SAMSHR1132_10950
    MSSA476:
    SAS1186
    Mu3:
    SAHV_1242 (xerC)
    Mu50:
    SAV1252 (xerC)
    MW2:
    MW1135 (xerC)
    RF122:
    SAB1114
    ST398:
    SAPIG1254 (xerC)
    T0131:
    SAT0131_01303
    TCH60:
    HMPREF0772_11978 (xerC)
    TW20:
    SATW20_12460
    USA300_TCH1516:
    USA300HOU_1183 (xerC)
    VC40:
    SAVC_05425

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
    N315            MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLY
    NCTC8325        MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
    Newman          MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
    USA300_FPR3757  MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
                    *****:************************************:*:***************

    COL             SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
    N315            SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
    NCTC8325        SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
    Newman          SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
    USA300_FPR3757  SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
                    ************************************************************

    COL             TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
    N315            TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
    NCTC8325        TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
    Newman          TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
    USA300_FPR3757  TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
                    ************************************************************

    COL             YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
    N315            YCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
    NCTC8325        YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
    Newman          YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
    USA300_FPR3757  YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
                    *************************:**********************************

    COL             RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
    N315            RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
    NCTC8325        RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
    Newman          RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
    USA300_FPR3757  RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
                    **********************************************************