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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003553000
- symbol?: codY
- synonym:
- description?: GTP-sensing pleiotropic transcriptional regulator CodY
- GTP-sensing pleiotropic transcriptional regulator CodY
- transcriptional repressor CodY
- GTP-sensing pleiotropic transcriptional repressor CodY
- GTP-sensing transcriptional pleiotropic repressor codY
- CodY family transcriptional regulator
- CodY protein
- putative regulatory protein
- regulatory protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3889860..3890633
- synteny block?: BlockID0026300
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1213 (codY)
08BA02176:
C248_1286 (codY)
11819-97:
MS7_1213 (codY)
6850:
RSAU_001137 (codY)
71193:
ST398NM01_1257
ECT-R 2:
ECTR2_1111 (codY)
ED133:
SAOV_1257
ED98:
SAAV_1229 (codY)
HO 5096 0412:
SAEMRSA15_10880 (codY)
JH1:
SaurJH1_1340
JH9:
SaurJH9_1315
JKD6008:
SAA6008_01210 (codY)
JKD6159:
SAA6159_01110 (codY)
LGA251:
SARLGA251_11660 (codY)
M013:
M013TW_1195
MRSA252:
SAR1231 (codY)
MSHR1132:
SAMSHR1132_10980
MSSA476:
SAS1189
Mu3:
SAHV_1245 (codY)
Mu50:
SAV1255 (codY)
MW2:
MW1138 (codY)
RF122:
SAB1117 (codY)
ST398:
SAPIG1257 (codY)
T0131:
SAT0131_01307
TCH60:
HMPREF0772_11975 (codY)
TW20:
SATW20_12490 (codY)
USA300_TCH1516:
USA300HOU_1186
VC40:
SAVC_05440
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQ
N315 MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQ
NCTC8325 MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQ
Newman MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQ
USA300_FPR3757 MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQ
************************************************************
COL RIIQMLEERHIPSEYTERLMEVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGG
N315 RIIQMLEERHIPSEYTERLMEVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGG
NCTC8325 RIIQMLEERHIPSEYTERLMEVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGG
Newman RIIQMLEERHIPSEYTERLMEVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGG
USA300_FPR3757 RIIQMLEERHIPSEYTERLMEVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGG
************************************************************
COL ERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHSEVEKEARDKAAITMAINSLS
N315 ERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHSEVEKEARDKAAITMAINSLS
NCTC8325 ERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHSEVEKEARDKAAITMAINSLS
Newman ERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHSEVEKEARDKAAITMAINSLS
USA300_FPR3757 ERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHSEVEKEARDKAAITMAINSLS
************************************************************
COL YSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
N315 YSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
NCTC8325 YSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
Newman YSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
USA300_FPR3757 YSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
************************************************************
COL FIKVKKEKFLDELEKSK
N315 FIKVKKEKFLDELEKSK
NCTC8325 FIKVKKEKFLDELEKSK
Newman FIKVKKEKFLDELEKSK
USA300_FPR3757 FIKVKKEKFLDELEKSK
*****************