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Summary[edit source | edit]

  • pan ID?: SAUPAN003764000
  • symbol?: trpD
  • description?: anthranilate phosphoribosyltransferase

      descriptions from strain specific annotations:

    • anthranilate phosphoribosyltransferase
    • anthranilate phosphoribosyltransferase (pseudogene)
  • strand?: +
  • coordinates?: 4061767..4062774
  • synteny block?: BlockID0028260
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1405 (trpD)
    N315:
    SA1201 (trpD)
    NCTC8325:
    Newman:
    NWMN_1281 (trpD)
    USA300_FPR3757:
    04-02981:
    SA2981_1323 (trpD)
    08BA02176:
    C248_1407 (trpD)
    11819-97:
    MS7_1326 (trpD)
    71193:
    ST398NM01_1370
    ECT-R 2:
    ECTR2_1226 (trpD)
    ED133:
    SAOV_1379
    ED98:
    SAAV_1351 (trpD)
    HO 5096 0412:
    SAEMRSA15_12170 (trpD)
    JH1:
    SaurJH1_1459 (trpD)
    JH9:
    SaurJH9_1430 (trpD)
    JKD6008:
    SAA6008_01334 (trpD)
    JKD6159:
    SAA6159_01235 (trpD)
    LGA251:
    SARLGA251_12780 (trpD)
    M013:
    M013TW_1315
    MRSA252:
    SAR1382 (trpD)
    MSHR1132:
    SAMSHR1132_12120
    MSSA476:
    SAS1309 (trpD)
    Mu3:
    SAHV_1357 (trpD)
    Mu50:
    SAV1369 (trpD)
    MW2:
    MW1256 (trpD)
    RF122:
    SAB1224 (trpD)
    ST398:
    SAPIG1370 (trpD)
    T0131:
    SAT0131_01441 (gpmA)
    TCH60:
    HMPREF0772_11838 (trpD)
    TW20:
    SATW20_13690 (trpD)
    USA300_TCH1516:
    USA300HOU_1304 (trpD)
    VC40:
    SAVC_06095 (trpD)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTLLTRIKTETILLESDIKELIDILISPSIGTDIKYELLSSYSEREIQQQELTYIVRSLI
    N315            MTLLTRIKTETILLESDIKELIDILISPSIGTDIKYELLSSYSEREIQQQELTYIVRSLI
    NCTC8325        MTLLTRIKTETILLESDIKELIDILISPSIGTDIKYELLSSYSEREIQQQELTYIVRSLI
    Newman          MTLLTRIKTETILLESDIKELIDILISPSIGTDIKYELLSSYSEREIQQQELTYIVRSLI
    USA300_FPR3757  MTLLTRIKTETILLESDIKELIDILISPSIGTDIKYELLSSYSEREIQQQELTYIVRSLI
                    ************************************************************

    COL             NTMYPHQPCYEGAMCVCGTGGDKSNSFNISTTVAFVVASAGVKVIKHGNKSITSNSGSTD
    N315            NTMYPHQPCYEGAMCVCGTGGDKSNSFNISTTVAFVVASAGVKVIKHGNKSITSNSGSTD
    NCTC8325        NTMYPHQPCYEGAMCVCGTGGDKSNSFNISTTVAFVVASAGVKVIKHGNKSITSNSGSTD
    Newman          NTMYPHQPCYEGAMCVCGTGGDKSNSFNISTTVAFVVASAGVKVIKHGNKSITSNSGSTD
    USA300_FPR3757  NTMYPHQPCYEGAMCVCGTGGDKSNSFNISTTVAFVVASAGVKVIKHGNKSITSNSGSTD
                    ************************************************************

    COL             LLNQMNIQTTTVDDTPNQLNEKDLVFIGATESYPIMKYMQPVRKMIGKPTILNLVGPLIN
    N315            LLNQMNIQTTTVDDTPNQLNEKDLVFIGATESYPIMKYMQPVRKMIGKPTILNLVGPLIN
    NCTC8325        LLNQMNIQTTTVDDTPNQLNEKDLVFIGATESYPIMKYMQPVRKMIGKPTILNLVGPLIN
    Newman          LLNQMNIQTTTVDDTPNQLNEKDLVFIGATESYPIMKYMQPVRKMIGKPTILNLVGPLIN
    USA300_FPR3757  LLNQMNIQTTTVDDTPNQLNEKDLVFIGATESYPIMKYMQPVRKMIGKPTILNLVGPLIN
                    ************************************************************

    COL             PYHLTYQMVGVFDPTKLKLVAKTIKDLGRKRAIVLHGANGMDEATLSGDNLIYELTEDGE
    N315            PYHLTYQMVGVFDPTKLKLVAKTIKDLGRKRAIVLHGANGMDEATLSGDNLIYELTEDGE
    NCTC8325        PYHLTYQMVGVFDPTKLKLVAKTIKDLGRKRAIVLHGANGMDEATLSGDNLIYELTEDGE
    Newman          PYHLTYQMVGVFDPTKLKLVAKTIKDLGRKRAIVLHGANGMDEATLSGDNLIYELTEDGE
    USA300_FPR3757  PYHLTYQMVGVFDPTKLKLVAKTIKDLGRKRAIVLHGANGMDEATLSGDNLIYELTEDGE
                    ************************************************************

    COL             IKNYTLNATDYGLKHAPNSDFKGGSPEENLAISLNILNGKDQSSRRDVVLLNAGLSLYVA
    N315            IKNYTLNATDYGLKHAPNSDFKGGSPEENLAISLNILNGKDQSSRRDVVLLNAGLSLYVA
    NCTC8325        IKNYTLNATDYGLKHAPNSDFKGGSPEENLAISLNILNGKDQSSRRDVVLLNAGLSLYVA
    Newman          IKNYTLNATDYGLKHAPNSDFKGGSPEENLAISLNILNGKDQSSRRDVVLLNAGLSLYVA
    USA300_FPR3757  IKNYTLNATDYGLKHAPNSDFKGGSPEENLAISLNILNGKDQSSRRDVVLLNAGLSLYVA
                    ************************************************************

    COL             EKVDTIAEGIELATTLIDNGEALEKYHQMRGE
    N315            EKVDTIAEGIELATTLIDNGEALKKYHQMRGE
    NCTC8325        EKVDTIAEGIELATTLIDNGEALEKYHQMRGE
    Newman          EKVDTIAEGIELATTLIDNGEALEKYHQMRGE
    USA300_FPR3757  EKVDTIAEGIELATTLIDNGEALEKYHQMRGE
                    ***********************:********