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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003782000
- symbol?: —
- synonym:
- description?: SWIM zinc finger family protein
- SWIM zinc finger family protein
- SWIM zinc finger protein, putative
- pseudogene
- SWIM zinc finger domain-containing protein
- transcriptional regulator
- zinc finger SWIM domain-containing protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4077242..4077692
- synteny block?: BlockID0028390
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1332
08BA02176:
C248_1415
11819-97:
MS7_1335
6850:
RSAU_001258
71193:
ST398NM01_1378
ECT-R 2:
ECTR2_1235
ED133:
SAOV_1387c
ED98:
SAAV_1360
HO 5096 0412:
SAEMRSA15_12420
JH1:
SaurJH1_1468
JH9:
SaurJH9_1439
JKD6008:
SAA6008_01342
JKD6159:
SAA6159_01245
LGA251:
SARLGA251_12950
M013:
M013TW_1323
MRSA252:
SAR1391
MSHR1132:
SAMSHR1132_12200
MSSA476:
SAS1319
Mu3:
SAHV_1366
Mu50:
SAV1378
MW2:
MW1266
RF122:
SAB1233c
ST398:
SAPIG1378
T0131:
SAT0131_01449
TCH60:
HMPREF0772_11830
TW20:
SATW20_13770
USA300_TCH1516:
USA300HOU_1312
VC40:
SAVC_06135
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MGLLDIASIRSIERGFNYYQSECVINLKSFSETQHEAEVKGSGNKVYRCYIDMEHPRKSI
N315 MGLLDIASIRSIERGFNYYQSECVINLKSFSETQHEAEVKGSGNKVYRCYIDMEHPRKSK
NCTC8325 MGLLDIASIRSIERGFNYYQSECVINLKSFSETQHEAEVKGSGNKVYRCYIDMEHPRKSI
Newman MGLLDIASIRSIERGFNYYQSECVINLKSFSETQHEAEVKGSGNKVYRCYIDMEHPRKSI
USA300_FPR3757 MGLLDIASIRSIERGFNYYQSECVINLKSFSETQHEAEVKGSGNKVYRCYIDMEHPRKSI
***********************************************************
COL CNCPHADGRRVICKHMIALLFTASPEAANKHIMMLNEVEEDYQLRRNMWIDSLKEMINDM
N315 CNCPHADGRRVICKHMIALLFTASPEAANKHIMMLNEVEEDYQLRRNMWIDSLKEMINDM
NCTC8325 CNCPHADGRRVICKHMIALLFTASPEAANKHIMMLNEVEEDYQLRRNMWIDSLKEMINDM
Newman CNCPHADGRRVICKHMIALLFTASPEAANKHIMMLNEVEEDYQLRRNMWIDSLKEMINDM
USA300_FPR3757 CNCPHADGRRVICKHMIALLFTASPEAANKHIMMLNEVEEDYQLRRNMWIDSLKEMINDM
************************************************************
COL SEEELRDAYLNMLIEHGEMAELFGLDEEEEMFEDEFY
N315 SEEELRDAYLNMLIEHGEMAELFGLDEEEEMFEDEFY
NCTC8325 SEEELRDAYLNMLIEHGEMAELFGLDEEEEMFEDEFY
Newman SEEELRDAYLNMLIEHGEMAELFGLDEEEEMFEDEFY
USA300_FPR3757 SEEELRDAYLNMLIEHGEMAELFGLDEEEEMFEDEFY
*************************************