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Summary[edit source | edit]

  • pan ID?: SAUPAN003790000
  • symbol?:
  • description?: oligoendopeptidase F

      descriptions from strain specific annotations:

    • oligoendopeptidase F
    • M3 family oligoendopeptidase F
    • oligoendopeptidase
    • oligoendopeptidase F, putative
    • putative peptidase
  • strand?: +
  • coordinates?: 4084098..4085942
  • synteny block?: BlockID0028470
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    NWMN_1295 (pepF)
    USA300_FPR3757:
    04-02981:
    SA2981_1338
    08BA02176:
    C248_1421
    11819-97:
    MS7_1341
    71193:
    ST398NM01_1384
    ECT-R 2:
    ECTR2_1241 (pepF)
    ED133:
    SAOV_1393
    ED98:
    SAAV_1366
    HO 5096 0412:
    SAEMRSA15_12480
    JH1:
    SaurJH1_1474
    JH9:
    SaurJH9_1445
    JKD6008:
    SAA6008_01348
    JKD6159:
    SAA6159_01251
    LGA251:
    SARLGA251_13010
    M013:
    M013TW_1329
    MRSA252:
    SAR1397
    MSHR1132:
    SAMSHR1132_12260
    MSSA476:
    SAS1325
    Mu3:
    SAHV_1372
    Mu50:
    SAV1384
    MW2:
    MW1272
    RF122:
    SAB1240
    ST398:
    SAPIG1384 (pepF)
    T0131:
    SAT0131_01455 (bioF)
    TCH60:
    HMPREF0772_11824 (pepF)
    TW20:
    SATW20_13830
    USA300_TCH1516:
    USA300HOU_1318
    VC40:
    SAVC_06165

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSQGLPLREDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFHHTYATTLNSIEQINTA
    N315            MSQGLPLREDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFHHTYATTLNSIEQINTA
    NCTC8325        MSQGLPLREDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFHHTYATTLNSIEQINTA
    Newman          MSQGLPLREDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFHHTYATTLNSIEQINTA
    USA300_FPR3757  MSQGLPLREDVPVSETWDLVDLFKDDQQYYESIDALVQQANQFHHTYATTLNSIEQINTA
                    ************************************************************

    COL             LAELENILIALDRLSNYAELRLSVDTSNIEAQVLSAKLSTTYGKIVSQLSFVESEILELP
    N315            LAELENILIALDRLSNYAELRLSVDTSNIEAQVLSAKLSTTYGKIVSQLSFVESEILELP
    NCTC8325        LAELENILIALDRLSNYAELRLSVDTSNIEAQVLSAKLSTTYGKIVSQLSFVESEILELP
    Newman          LAELENILIALDRLSNYAELRLSVDTSNIEAQVLSAKLSTTYGKIVSQLSFVESEILELP
    USA300_FPR3757  LAELENILIALDRLSNYAELRLSVDTSNIEAQVLSAKLSTTYGKIVSQLSFVESEILELP
                    ************************************************************

    COL             EEILQQLEESCPYQHYIKQLIKQKPFQLSASVEQVLATLSPTLNSPYDLYGTTKMLDITF
    N315            EEILQQLEESCPYQHYIKQLIKQKPFQLSASVEQVLATLSPTLNSPYDLYGTTKMLDITF
    NCTC8325        EEILQQLEESCPYQHYIKQLIKQKPFQLSASVEQVLATLSPTLNSPYDLYGTTKMLDITF
    Newman          EEILQQLEESCPYQHYIKQLIKQKPFQLSASVEQVLATLSPTLNSPYDLYGTTKMLDITF
    USA300_FPR3757  EEILQQLEESCPYQHYIKQLIKQKPFQLSASVEQVLATLSPTLNSPYDLYGTTKMLDITF
                    ************************************************************

    COL             DSFEHDGTTYPVDYATFENDYEDNKDPEFRRKSFKSFSDGIRKYQHTTAATYNMQVQQEK
    N315            DSFEHDGTTYPVDYATFENDYEDNKDPEFRRKSFKSFSDGIRKYQHTTAATYNMQVQQEK
    NCTC8325        DSFEHDGTTYPVDYATFENDYEDNKDPEFRRKSFKSFSDGIRKYQHTTAATYNMQVQQEK
    Newman          DSFEHDGTTYPVDYATFENDYEDNKDPEFRRKSFKSFSDGIRKYQHTTAATYNMQVQQEK
    USA300_FPR3757  DSFEHDGTTYPVDYATFENDYEDNKDPEFRRKSFKSFSDGIRKYQHTTAATYNMQVQQEK
                    ************************************************************

    COL             IEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMRDLAPVMQKYAKLLQRIHGLDNMRFE
    N315            IEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMRDLAPVMQKYAKLLQRIHGLDNMRFE
    NCTC8325        IEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMRDLAPVMQKYAKLLQRIHGLDNMRFE
    Newman          IEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMRDLAPVMQKYAKLLQRIHGLDNMRFE
    USA300_FPR3757  IEADLRGFESVIDYLLHSQEVTRDMFDRQIDMIMRDLAPVMQKYAKLLQRIHGLDNMRFE
                    ************************************************************

    COL             DLKISVDPDYEPEISIEDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAF
    N315            DLKISVDPDYEPEISIEDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAF
    NCTC8325        DLKISVDPDYEPEISIEDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAF
    Newman          DLKISVDPDYEPEISIEDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAF
    USA300_FPR3757  DLKISVDPDYEPEISIEDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAF
                    ************************************************************

    COL             CASPYFTHSYVFISWTGKMAEAFVLAHELGHAGHFTLAQKHQPYLESEASMYFVEAPSTM
    N315            CASPYFTHSYVFISWTGKMAEAFVLAHELGHAGHFTLAQKHQPYLESEASMYFVEAPSTM
    NCTC8325        CASPYFTHSYVFISWTGKMAEAFVLAHELGHAGHFTLAQKHQPYLESEASMYFVEAPSTM
    Newman          CASPYFTHSYVFISWTGKMAEAFVLAHELGHAGHFTLAQKHQPYLESEASMYFVEAPSTM
    USA300_FPR3757  CASPYFTHSYVFISWTGKMAEAFVLAHELGHAGHFTLAQKHQPYLESEASMYFVEAPSTM
                    ************************************************************

    COL             NEMLMANYLFNTSDNPRFKRWIIGSILSRTYYHNMVTHLLEAAYQREVYHKVDQGESLNA
    N315            NEMLMANYLFNTSDNPRFKRWVIGSILSRTYYHNMVTHLLEAAYQREVYHKVDQGESLNA
    NCTC8325        NEMLMANYLFNTSDNPRFKRWVIGSILSRTYYHNMVTHLLEAAYQREVYHKVDQGESLNA
    Newman          NEMLMANYLFNTSDNPRFKRWVIGSILSRTYYHNMVTHLLEAAYQREVYHKVDQGESLNA
    USA300_FPR3757  NEMLMANYLFNTSDNPRFKRWVIGSILSRTYYHNMVTHLLEAAYQREVYHKVDQGESLNA
                    *********************:**************************************

    COL             PTLNEIMLNVYKQFFGDAVDMTEGAELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKN
    N315            PTLNEIMLNVYKQFFGDAVDMTEGAELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKN
    NCTC8325        PTLNEIMLNVYKQFFGDAVDMTEGAELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKN
    Newman          PTLNEIMLNVYKQFFGDAVDMTEGAELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKN
    USA300_FPR3757  PTLNEIMLNVYKQFFGDAVDMTEGAELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKN
                    ************************************************************

    COL             EGQPAVDAWLETLKKGGSVSPVELANIAGVDITTEQPLKSTIQYISDLVDEVEKLTDEIE
    N315            EGQPAVDAWLETLKKGGSVSPVELANIAGVDITTEQPLKSTIQYISDLVDEVEKLTDEIE
    NCTC8325        EGQPAVDAWLETLKKGGSVSPVELANIAGVDITTEQPLKSTIQYISDLVDEVEKLTDEIE
    Newman          EGQPAVDAWLETLKKGGSVSPVELANIAGVDITTEQPLKSTIQYISDLVDEVEKLTDEIE
    USA300_FPR3757  EGQPAVDAWLETLKKGGSVSPVELANIAGVDITTEQPLKSTIQYISDLVDEVEKLTDEIE
                    ************************************************************

    COL             QANN
    N315            QANN
    NCTC8325        QANN
    Newman          QANN
    USA300_FPR3757  QANN
                    ****