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Summary[edit source | edit]

  • pan ID?: SAUPAN003809000
  • symbol?: dapB
  • description?: dihydrodipicolinate reductase
  • strand?: +
  • coordinates?: 4100325..4101047
  • synteny block?: BlockID0028660
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1431 (dapB)
    N315:
    SA1228 (dapB)
    NCTC8325:
    Newman:
    NWMN_1307 (dapB)
    USA300_FPR3757:
    04-02981:
    SA2981_1350 (dapB)
    08BA02176:
    C248_1435 (dapB)
    11819-97:
    MS7_1352 (dapB)
    71193:
    ST398NM01_1397
    ECT-R 2:
    ECTR2_1253 (dapB)
    ED133:
    SAOV_1405 (dapB)
    ED98:
    SAAV_1379 (dapB)
    HO 5096 0412:
    SAEMRSA15_12590 (dapB)
    JH1:
    SaurJH1_1486
    JH9:
    SaurJH9_1457
    JKD6008:
    SAA6008_01360 (dapB)
    JKD6159:
    SAA6159_01262 (dapB)
    LGA251:
    SARLGA251_13120 (dapB)
    M013:
    M013TW_1340
    MRSA252:
    SAR1408 (dapB)
    MSHR1132:
    SAMSHR1132_12370
    MSSA476:
    SAS1337
    Mu3:
    SAHV_1384 (dapB)
    Mu50:
    SAV1396 (dapB)
    MW2:
    MW1284 (dapB)
    RF122:
    SAB1251 (dapB)
    ST398:
    SAPIG1397 (dapB)
    T0131:
    SAT0131_01470
    TCH60:
    HMPREF0772_11813 (dapB)
    TW20:
    SATW20_13950 (dapB)
    USA300_TCH1516:
    USA300HOU_1331 (dapB)
    VC40:
    SAVC_06225

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSN
    N315            MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKDADVAIDFSN
    NCTC8325        ----------MNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSN
    Newman          MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSN
    USA300_FPR3757  MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSN
                              ****************************************.*********

    COL             PNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAA
    N315            PNLLFPLLDEEFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAA
    NCTC8325        PNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAA
    Newman          PNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAA
    USA300_FPR3757  PNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAA
                    **********:*************************************************

    COL             VPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIG
    N315            VPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIG
    NCTC8325        VPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIG
    Newman          VPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIG
    USA300_FPR3757  VPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIG
                    ************************************************************

    COL             IHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
    N315            IHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
    NCTC8325        IHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
    Newman          IHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
    USA300_FPR3757  IHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
                    ************************************************************