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Summary[edit source | edit]

  • pan ID?: SAUPAN003871000
  • symbol?:
  • description?: ribonuclease H

      descriptions from strain specific annotations:

    • ribonuclease H
    • cell wall enzyme EbsB
    • putative cell wall enzyme EbsB
    • cell wall enzyme EbsB, putative
    • cell wall enzyme EbsB-like protein
    • Ribonuclease HI
    • ribonuclease HI-like protein
    • RNase H family protein
  • strand?: +
  • coordinates?: 4145660..4146061
  • synteny block?: BlockID0029270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1388
    08BA02176:
    C248_1473
    11819-97:
    MS7_1390
    71193:
    ST398NM01_1433
    ECT-R 2:
    ECTR2_1288
    ED133:
    SAOV_1442
    ED98:
    SAAV_1416
    HO 5096 0412:
    SAEMRSA15_12960
    JH1:
    SaurJH1_1523
    JH9:
    SaurJH9_1494
    JKD6008:
    SAA6008_01402
    JKD6159:
    SAA6159_01299
    LGA251:
    SARLGA251_13490
    M013:
    M013TW_1380
    MRSA252:
    SAR1446
    MSHR1132:
    SAMSHR1132_12740
    MSSA476:
    SAS1376
    Mu3:
    SAHV_1421
    Mu50:
    SAV1433
    MW2:
    MW1323
    RF122:
    SAB1288
    ST398:
    SAPIG1433
    T0131:
    SAT0131_01515
    TCH60:
    HMPREF0772_11773 (rnhA)
    TW20:
    SATW20_14340
    USA300_TCH1516:
    USA300HOU_1371
    VC40:
    SAVC_06425

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARELN
    N315            MAKINFDAATKGNPGISTCAIVIKEDKQHYTYTHELGEMDNHTAEWAACIYALEHARELN
    NCTC8325        MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARELN
    Newman          MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARELN
    USA300_FPR3757  MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALEHARELN
                    **************************:*********************************

    COL             VQNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKDFDLLFVKWIPREQNKEANQH
    N315            VQNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKDFDLLFVKWIPREQNKEANQH
    NCTC8325        VQNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKDFDLLFVKWIPREQNKEANQH
    Newman          VQNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKDFDLLFVKWIPREQNKEANQH
    USA300_FPR3757  VQNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKDFDLLFVKWIPREQNKEANQH
                    ************************************************************

    COL             AQQALYKLIKKNK
    N315            AQQALYKLIKKNK
    NCTC8325        AQQALYKLIKKNK
    Newman          AQQALYKLIKKNK
    USA300_FPR3757  AQQALYKLIKKNK
                    *************