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Summary[edit | edit source]

  • pan ID?: SAUPAN003906000
  • symbol?:
  • synonym:
  • description?: hypothetical protein with DUF1798

      descriptions from strain specific annotations:

    • hypothetical protein with DUF1798
    • YppE family protein
  • strand?: -
  • coordinates?: 4225796..4226146
  • synteny block?: BlockID0029520
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1403
    08BA02176:
    C248_1487
    11819-97:
    MS7_1404
    6850:
    RSAU_001320
    71193:
    ST398NM01_1447
    ECT-R 2:
    ECTR2_1302
    ED133:
    SAOV_1456
    ED98:
    SAAV_1433
    HO 5096 0412:
    SAEMRSA15_13090
    JH1:
    SaurJH1_1536
    JH9:
    SaurJH9_1507
    JKD6008:
    SAA6008_01416
    JKD6159:
    SAA6159_01313
    LGA251:
    SARLGA251_13620
    M013:
    M013TW_1395
    MRSA252:
    SAR1459
    MSHR1132:
    SAMSHR1132_12880
    MSSA476:
    SAS1390
    Mu3:
    SAHV_1436
    Mu50:
    SAV1448
    MW2:
    MW1337
    RF122:
    SAB1312c
    ST398:
    SAPIG1447
    T0131:
    SAT0131_01536
    TCH60:
    HMPREF0772_11757
    TW20:
    SATW20_14470
    USA300_TCH1516:
    USA300HOU_1385
    VC40:
    SAVC_06495

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MNDVVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVP
    N315            MNDVVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSMLNEIKLHREFIIEVP
    NCTC8325        MNDVVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVP
    Newman          MNDVVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVP
    USA300_FPR3757  MNDVVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVP
                    ********************************************:***************

    COL             YMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTDG
    N315            YMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTYG
    NCTC8325        YMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTDG
    Newman          YMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTDG
    USA300_FPR3757  YMNSRKFELLIANIEQLSVECHFKRTSRKLFIEKLKSVQYDLQNILDGVTKEGTDG
                    ****************************************************** *