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Summary[edit source | edit]

  • pan ID?: SAUPAN003925000
  • symbol?: aroB
  • description?: 3-dehydroquinate synthase

      descriptions from strain specific annotations:

    • 3-dehydroquinate synthase
    • putative 3-dehydroquinate synthase
  • strand?: -
  • coordinates?: 4246094..4247158
  • synteny block?: BlockID0029710
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1505 (aroB)
    N315:
    SA1298 (aroB)
    NCTC8325:
    Newman:
    NWMN_1376 (aroB)
    USA300_FPR3757:
    04-02981:
    SA2981_1421 (aroB)
    08BA02176:
    C248_1505 (aroB)
    11819-97:
    MS7_1421 (aroB)
    71193:
    ST398NM01_1465
    ECT-R 2:
    ECTR2_1319 (aroB)
    ED133:
    SAOV_1473 (aroB)
    ED98:
    SAAV_1452 (aroB)
    HO 5096 0412:
    SAEMRSA15_13260 (aroB)
    JH1:
    SaurJH1_1553 (aroB)
    JH9:
    SaurJH9_1524 (aroB)
    JKD6008:
    SAA6008_01434 (aroB)
    JKD6159:
    SAA6159_01330 (aroB)
    LGA251:
    SARLGA251_13790 (aroB)
    M013:
    M013TW_1413
    MRSA252:
    SAR1476 (aroB)
    MSHR1132:
    SAMSHR1132_13050
    MSSA476:
    SAS1408 (aroB)
    Mu3:
    SAHV_1453 (aroB)
    Mu50:
    SAV1465 (aroB)
    MW2:
    MW1355 (aroB)
    RF122:
    SAB1329c (aroB)
    ST398:
    SAPIG1465 (aroB)
    T0131:
    SAT0131_01554 (set2nm)
    TCH60:
    HMPREF0772_11739 (aroB)
    TW20:
    SATW20_14640 (aroB)
    USA300_TCH1516:
    USA300HOU_1403 (aroB)
    VC40:
    SAVC_06580 (aroB)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKLQTTYPSNNYPIYVEHGAIDHISTYIDQFDQSFILIDEHVNQYFADKFDDILSYENVH
    N315            MKLQTTYPSNNYPIFVEHGAIDHISTYIDQFDQSFILIDEHVNQYFADKFDDILSYENVH
    NCTC8325        MKLQTTYPSNNYPIYVEHGAIDHISTYIDQFDQSFILIDEHVNQYFADKFDDILSYENVH
    Newman          MKLQTTYPSNNYPIYVEHGAIDHISTYIDQFDQSFILIDEHVNQYFADKFDDILSYENVH
    USA300_FPR3757  MKLQTTYPSNNYPIYVEHGAIDHISTYIDQFDQSFILIDEHVNQYFADKFDDILSYENVH
                    **************:*********************************************

    COL             KVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFIAATLLRGVHFI
    N315            KVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFI
    NCTC8325        KVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFIAATLLRGVHFI
    Newman          KVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFIAATLLRGVHFI
    USA300_FPR3757  KVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFIAATLLRGVHFI
                    ************************************************:***********

    COL             QVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFEQILSGYAEVY
    N315            QVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFEQILSGYAEVY
    NCTC8325        QVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLVFLKTLPFEQILSGYAEVY
    Newman          QVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFEQILSGYAEVY
    USA300_FPR3757  QVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFEQILSGYAEVY
                    ***************************************** ******************

    COL             KHALLNGESATQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVIADEKEQGVRKFLNL
    N315            KHALLNGESTTQEIEQHFKDREILQSLNGMDKYIAKGIETKLDIVVADEKEQGVRKFLNL
    NCTC8325        KHALLNGESATQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVIADEKEQGVRKFLNL
    Newman          KHALLNGESATQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVIADEKEQGVRKFLNL
    USA300_FPR3757  KHALLNGESATQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVIADEKEQGVRKFLNL
                    *********:**:********************************:**************

    COL             GHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDSKHDINHYIQYLIQLGYPLDMITD
    N315            GHTFGHAVEYNHKIAHGHAVMIGIIYQFIVANILFNSNHDIQHYINYLTKLGYPLETITD
    NCTC8325        GHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDSKHDINHYIQYLIQLGYPLDMITD
    Newman          GHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDSKHDINHYIQYLIQLGYPLDMITD
    USA300_FPR3757  GHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDSKHDINHYIQYLIQLGYPLDMITD
                    ********** ***.******:********** **:*:***:***:** :*****: ***

    COL             LDFETLYQYMLSDKKNDKQGVQMVLIRQFGDIVVQHVDQLTLQHACEQLKTYFK
    N315            IDFETIYQYMLSDKKNDKQGVQMVLIKHFGDIVVQHIDQTTLQHACEQLKTYFK
    NCTC8325        LDFETLYQYMLSDKKNDKQGVQMVLIRQFGDIVVQHVDQLTLQHACEQLKTYFK
    Newman          LDFETLYQYMLSDKKNDKQGVQMVLIRQFGDIVVQHVDQLTLQHACEQLKTYFK
    USA300_FPR3757  LDFETLYQYMLSDKKNDKQGVQMVLIRQFGDIVVQHVDQLTLQHACEQLKTYFK
                    :****:********************::********:** **************