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Summary[edit source | edit]

  • pan ID?: SAUPAN003926000
  • symbol?: aroC
  • description?: chorismate synthase
  • strand?: -
  • coordinates?: 4247184..4248350
  • synteny block?: BlockID0029720
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1506 (aroC)
    N315:
    SA1299 (aroC)
    NCTC8325:
    Newman:
    NWMN_1377 (aroC)
    USA300_FPR3757:
    04-02981:
    SA2981_1422 (aroG)
    08BA02176:
    C248_1506 (aroC)
    11819-97:
    MS7_1422 (aroC)
    71193:
    ST398NM01_1466
    ECT-R 2:
    ECTR2_1320 (aroC)
    ED133:
    SAOV_1474 (aroC)
    ED98:
    SAAV_1453 (aroC)
    HO 5096 0412:
    SAEMRSA15_13270 (aroC)
    JH1:
    SaurJH1_1554
    JH9:
    SaurJH9_1525
    JKD6008:
    SAA6008_01435 (aroC)
    JKD6159:
    SAA6159_01331 (aroC)
    LGA251:
    SARLGA251_13800 (aroC)
    M013:
    M013TW_1414
    MRSA252:
    SAR1477 (aroC)
    MSHR1132:
    SAMSHR1132_13060
    MSSA476:
    SAS1409
    Mu3:
    SAHV_1454 (aroC)
    Mu50:
    SAV1466 (aroC)
    MW2:
    MW1356 (aroC)
    RF122:
    SAB1330c (aroC)
    ST398:
    SAPIG1466 (aroC)
    T0131:
    SAT0131_01555 (set3nm)
    TCH60:
    HMPREF0772_11738 (aroC)
    TW20:
    SATW20_14650 (aroC)
    USA300_TCH1516:
    USA300HOU_1404 (aroC)
    VC40:
    SAVC_06585

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
    N315            MRYLTSGESHGPQLTVIVEGIPANLEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
    NCTC8325        MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
    Newman          MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
    USA300_FPR3757  MRYLTSGESHGPQLTVIVEGVPANIEIKVEDINKEMFKRQGGYGRGRRMQIEKDTVEIVS
                    ********************:***:***********************************

    COL             GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
    N315            GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
    NCTC8325        GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
    Newman          GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
    USA300_FPR3757  GVRNGYTLGSPITMVVTNDDFTHWRKIMGAAPISEEERENMKRTITKPRPGHADLVGGMK
                    ************************************************************

    COL             YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
    N315            YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
    NCTC8325        YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
    Newman          YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
    USA300_FPR3757  YNHRDLRNVLERSSARETAARVAVGALCKVLLQQLDIDIYSRVVEIGGIKDKDFYDSETF
                    ************************************************************

    COL             KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
    N315            KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
    NCTC8325        KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
    Newman          KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
    USA300_FPR3757  KANLDRNDVRVIDDSIAQAMRDKIDEAKNEGDSIGGVVQVVVENMPVGVGSYVHYDRKLD
                    ************************************************************

    COL             GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
    N315            GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
    NCTC8325        GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
    Newman          GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
    USA300_FPR3757  GKIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYNSEIGYYRGSNHLGGLEGGMSN
                    ************************************************************

    COL             GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
    N315            GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
    NCTC8325        GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
    Newman          GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
    USA300_FPR3757  GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASIVCEHVVAFEIAK
                    ************************************************************

    COL             ALLEEFQSNHIEQLKQQIIERRQLNIEF
    N315            ALLEEFQSNHIEQLQQQIADRRQLNVEF
    NCTC8325        ALLEEFQSNHIEQLKQQIIERRQLNIEF
    Newman          ALLEEFQSNHIEQLKQQIIERRQLNIEF
    USA300_FPR3757  ALLEEFQSNHIEQLKQQIIERRQLNIEF
                    **************:*** :*****:**