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Summary[edit source | edit]

  • pan ID?: SAUPAN003954000
  • symbol?:
  • description?: pseudogene

      descriptions from strain specific annotations:

    • pseudogene
    • lipoprotein
    • lipoprotein, putative
  • strand?: -
  • coordinates?: 4267250..4268964
  • synteny block?: BlockID0030000
  • occurrence?: in 88% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1442
    08BA02176:
    C248_1530
    11819-97:
    MS7_1507
    71193:
    ST398NM01_1556
    ECT-R 2:
    ECTR2_1337
    ED133:
    ED98:
    SAAV_1474
    HO 5096 0412:
    JH1:
    SaurJH1_1573
    JH9:
    SaurJH9_1542
    JKD6008:
    SAA6008_01460
    JKD6159:
    SAA6159_01419
    LGA251:
    M013:
    M013TW_1433
    MRSA252:
    SAR1565
    MSHR1132:
    MSSA476:
    SAS1427
    Mu3:
    SAHV_1474
    Mu50:
    SAV1486
    MW2:
    MW1375
    RF122:
    SAB1351c
    ST398:
    SAPIG1556
    T0131:
    SAT0131_01583
    TCH60:
    HMPREF0772_11651
    TW20:
    SATW20_14880
    USA300_TCH1516:
    USA300HOU_1492
    VC40:
    SAVC_06700

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
    N315            MLKKAKLILIAVLVLSGCSTIENESKKDRNTETNTETKSVPEEMEASKYVGQGFQPPAEK
    NCTC8325        --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
    Newman          MKKFIGSVLATTLILGGCSTMENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
    USA300_FPR3757  --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
                                        :*******    *:**************************

    COL             NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
    N315            DAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVYVHCDDHDIVFNASIPF
    NCTC8325        NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
    Newman          NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
    USA300_FPR3757  NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
                    :********:.:: * ***** **************..*********:**.******:*:

    COL             YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
    N315            DKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEELDNLTEVLKEYKSKYKYTGYT
    NCTC8325        YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
    Newman          YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
    USA300_FPR3757  YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
                     *. *....*:**:*:***** :************:**: *** :.:** :.**:***:*

    COL             KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
    N315            ENAIMKTQNSGFRNEYYYLTAIPYTLDEYKRYFQPLIKEDDKSFRDGMRNSKKQLKDKSR
    NCTC8325        KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
    Newman          KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
    USA300_FPR3757  KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
                    ::** **** *::***:*:*  . :*.**::*::***:::**.*::**..::*:::  :.

    COL             TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
    N315            PYVVTTLFSTKDNFTKDNTIDEMIDFSEVLKKKKNIPHDLNVSLQISNKYINTKRPNYSK
    NCTC8325        TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
    Newman          TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
    USA300_FPR3757  TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
                    . .*:******.*******:*::*::*: * : ** *.. .:::**.:  ****:. *..

    COL             NRPIEYGVHSKDE-----
    N315            KEVIEVGVFNHEKANTND
    NCTC8325        NRPIEYGVHSKDE-----
    Newman          NRPIEYGVHSKDE-----
    USA300_FPR3757  NRPIEYGVHSKDE-----
                    :. ** **..:::