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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN003960000
  • symbol?:
  • description?: lipoprotein

      descriptions from strain specific annotations:

    • lipoprotein
    • putative lipoprotein
  • strand?: -
  • coordinates?: 4271557..4272780
  • synteny block?: BlockID0030060
  • occurrence?: in 53% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1447
    08BA02176:
    11819-97:
    MS7_1441
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_1480
    HO 5096 0412:
    JH1:
    SaurJH1_1578
    JH9:
    SaurJH9_1547
    JKD6008:
    SAA6008_01457
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    SAHV_1478
    Mu50:
    SAV1490
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_01580 (lpl7nm)
    TCH60:
    TW20:
    SATW20_14850
    USA300_TCH1516:
    USA300HOU_1427
    VC40:
    SAVC_06685

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNNESKKD----TNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
    N315            MENESSKD--------TNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHRKEFEKV
    NCTC8325        MNNESKKDTNTETNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
    Newman          MNNESKKD----TNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
    USA300_FPR3757  MNNESKKD----TNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
                    *:***.**        *********************************.**********

    COL             GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
    N315            GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
    NCTC8325        GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
    Newman          GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
    USA300_FPR3757  GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
                    ************************************************************

    COL             GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
    N315            GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFTKEAINKTQNVGYQNEY
    NCTC8325        GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
    Newman          GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
    USA300_FPR3757  GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
                    ******************************:*****:***********************

    COL             FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
    N315            FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELDYTANSNTVATLFSTNDKKNR
    NCTC8325        FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
    Newman          FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
    USA300_FPR3757  FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
                    ***************************************:****:***********::**

    COL             KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
    N315            KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
    NCTC8325        KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
    Newman          KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
    USA300_FPR3757  KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
                    ********************************************************