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Summary[edit source | edit]

  • pan ID?: SAUPAN004172000
  • symbol?: rpsT
  • description?: 30S ribosomal protein S20

      descriptions from strain specific annotations:

    • 30S ribosomal protein S20
    • putative 30S ribosomal protein S20
  • strand?: +
  • coordinates?: 4436493..4436753
  • synteny block?: BlockID0032020
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1642 (rpsT)
    N315:
    SA1414 (rpsT)
    NCTC8325:
    Newman:
    NWMN_1488 (rpsT)
    USA300_FPR3757:
    04-02981:
    SA2981_1544 (rpsT)
    08BA02176:
    C248_1628 (rpsT)
    11819-97:
    MS7_1603 (rpsT)
    71193:
    ST398NM01_1651
    ECT-R 2:
    ECTR2_1435 (rpsT)
    ED133:
    SAOV_1585 (rpsT)
    ED98:
    SAAV_1577 (rpsT)
    HO 5096 0412:
    SAEMRSA15_15050 (rpsT)
    JH1:
    SaurJH1_1678 (rpsT)
    JH9:
    SaurJH9_1643 (rpsT)
    JKD6008:
    SAA6008_01555 (rpsT)
    JKD6159:
    SAA6159_01521 (rpsT)
    LGA251:
    SARLGA251_14910 (rpsT)
    M013:
    M013TW_1600
    MRSA252:
    SAR1663 (rpsT)
    MSHR1132:
    SAMSHR1132_14250
    MSSA476:
    SAS1523 (rpsT)
    Mu3:
    SAHV_1573 (rpsT)
    Mu50:
    SAV1586 (rpsT)
    MW2:
    MW1537 (rpsT)
    RF122:
    SAB1458 (rpsT)
    ST398:
    SAPIG1651 (rpsT)
    T0131:
    SAT0131_01681
    TCH60:
    HMPREF0772_11555 (rpsT)
    TW20:
    SATW20_15810 (rpsT)
    USA300_TCH1516:
    USA300HOU_1587 (rpsT)
    VC40:
    SAVC_07185 (rpsT)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKA
    N315            MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKA
    NCTC8325        MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKA
    Newman          MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKA
    USA300_FPR3757  MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKA
                    ************************************************************

    COL             AQSNLIHSNKADRIKSQLMTANK
    N315            AQSNLIHSNKADRIKSQLMTANK
    NCTC8325        AQSNLIHSNKADRIKSQLMTANK
    Newman          AQSNLIHSNKADRIKSQLMTANK
    USA300_FPR3757  AQSNLIHSNKADRIKSQLMTANK
                    ***********************