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Summary[edit source | edit]

  • pan ID?: SAUPAN004236000
  • symbol?: hisS
  • description?: histidyl-tRNA synthetase

      descriptions from strain specific annotations:

    • histidyl-tRNA synthetase
    • histidine--tRNA ligase
  • strand?: -
  • coordinates?: 4481198..4482460
  • synteny block?: BlockID0032640
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1686 (hisS)
    N315:
    SA1457 (hisS)
    NCTC8325:
    Newman:
    NWMN_1533 (hisS)
    USA300_FPR3757:
    04-02981:
    SA2981_1589 (hisS)
    08BA02176:
    C248_1674 (hisS)
    11819-97:
    MS7_1646 (hisS)
    71193:
    ST398NM01_1694
    ECT-R 2:
    ECTR2_1479 (hisS)
    ED133:
    SAOV_1628 (hisS)
    ED98:
    SAAV_1624 (hisS)
    HO 5096 0412:
    SAEMRSA15_15480 (hisS)
    JH1:
    SaurJH1_1721 (hisS)
    JH9:
    SaurJH9_1688 (hisS)
    JKD6008:
    SAA6008_01600 (hisS)
    JKD6159:
    SAA6159_01563 (hisS)
    LGA251:
    SARLGA251_15330 (hisS)
    M013:
    M013TW_1651
    MRSA252:
    SAR1711 (hisS)
    MSHR1132:
    SAMSHR1132_14670
    MSSA476:
    SAS1567 (hisS)
    Mu3:
    SAHV_1618 (hisS)
    Mu50:
    SAV1631 (hisS)
    MW2:
    MW1581 (hisS)
    RF122:
    SAB1500c (hisS)
    ST398:
    SAPIG1694 (hisS)
    T0131:
    SAT0131_01729 (sdrD)
    TCH60:
    HMPREF0772_11511 (hisS)
    TW20:
    SATW20_16250 (hisS)
    USA300_TCH1516:
    USA300HOU_1629 (hisS)
    VC40:
    SAVC_07400 (hisS)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVV
    N315            MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVV
    NCTC8325        MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVV
    Newman          MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVV
    USA300_FPR3757  MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVV
                    ************************************************************

    COL             QKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR
    N315            QKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR
    NCTC8325        QKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR
    Newman          QKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR
    USA300_FPR3757  QKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR
                    ************************************************************

    COL             YRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALV
    N315            YRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALV
    NCTC8325        YRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALV
    Newman          YRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALV
    USA300_FPR3757  YRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALV
                    ************************************************************

    COL             KHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKA
    N315            KHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKA
    NCTC8325        KHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKA
    Newman          KHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKA
    USA300_FPR3757  KHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKA
                    ************************************************************

    COL             YLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPS
    N315            YLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPS
    NCTC8325        YLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPS
    Newman          YLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPS
    USA300_FPR3757  YLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPS
                    ************************************************************

    COL             ETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD
    N315            ETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD
    NCTC8325        ETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD
    Newman          ETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD
    USA300_FPR3757  ETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD
                    ************************************************************

    COL             KDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK
    N315            KDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK
    NCTC8325        KDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK
    Newman          KDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK
    USA300_FPR3757  KDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK
                    ************************************************************