From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN004252000
  • symbol?:
  • description?: YsxB like protein

      descriptions from strain specific annotations:

    • YsxB like protein
    • ribosome-associated protein
  • strand?: -
  • coordinates?: 4500090..4500290
  • synteny block?: BlockID0032800
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1604
    08BA02176:
    C248_1689
    11819-97:
    MS7_1661
    71193:
    ST398NM01_1709
    ECT-R 2:
    ECTR2_1494
    ED133:
    SAOV_1643
    ED98:
    SAAV_1639
    HO 5096 0412:
    SAEMRSA15_15630
    JH1:
    SaurJH1_1736
    JH9:
    SaurJH9_1703
    JKD6008:
    SAA6008_01615
    JKD6159:
    SAA6159_01578
    LGA251:
    SARLGA251_15480
    M013:
    M013TW_1666
    MRSA252:
    SAR1726
    MSHR1132:
    SAMSHR1132_14820
    MSSA476:
    SAS1582
    Mu3:
    SAHV_1633
    Mu50:
    SAV1646
    MW2:
    MW1596
    RF122:
    SAB1515c
    ST398:
    SAPIG1709
    T0131:
    SAT0131_01747
    TCH60:
    HMPREF0772_11496
    TW20:
    SATW20_16400
    USA300_TCH1516:
    USA300HOU_1645
    VC40:
    SAVC_07475

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINY
    N315            MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINY
    NCTC8325        MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINY
    Newman          MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINY
    USA300_FPR3757  MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINY
                    ************************************************************

    COL             DDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIRLNYK
    N315            DDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIRLNYK
    NCTC8325        DDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIRLNYK
    Newman          DDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIRLNYK
    USA300_FPR3757  DDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIRLNYK
                    **********************************************