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Summary[edit source | edit]

  • pan ID?: SAUPAN004285000
  • symbol?: hemC
  • description?: porphobilinogen deaminase

      descriptions from strain specific annotations:

    • porphobilinogen deaminase
    • hydroxymethylbilane synthase
  • strand?: -
  • coordinates?: 4529185..4530111
  • synteny block?: BlockID0033090
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1717 (hemC)
    N315:
    SA1494 (hemC)
    NCTC8325:
    Newman:
    NWMN_1564 (hemC)
    USA300_FPR3757:
    04-02981:
    SA2981_1630 (hemC)
    08BA02176:
    C248_1711 (hemC)
    11819-97:
    MS7_1678 (hemC)
    71193:
    ST398NM01_1725
    ECT-R 2:
    ECTR2_1511 (hemC)
    ED133:
    SAOV_1659 (hemC)
    ED98:
    SAAV_1657 (hemC)
    HO 5096 0412:
    SAEMRSA15_15810 (hemC)
    JH1:
    SaurJH1_1762 (hemC)
    JH9:
    SaurJH9_1728 (hemC)
    JKD6008:
    SAA6008_01638 (hemC)
    JKD6159:
    SAA6159_01595 (hemC)
    LGA251:
    SARLGA251_15630 (hemC)
    M013:
    M013TW_1684
    MRSA252:
    SAR1750 (hemC)
    MSHR1132:
    SAMSHR1132_14980
    MSSA476:
    SAS1599 (hemC)
    Mu3:
    SAHV_1657 (hemC)
    Mu50:
    SAV1670 (hemC)
    MW2:
    MW1614 (hemC)
    RF122:
    SAB1530c (hemC)
    ST398:
    SAPIG1725 (hemC)
    T0131:
    SAT0131_01771
    TCH60:
    HMPREF0772_11480 (hemC)
    TW20:
    SATW20_16610 (hemC)
    USA300_TCH1516:
    USA300HOU_1662 (hemC)
    VC40:
    SAVC_07560 (hemC)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
    N315            MRKLVVGSRRSKLALTQSQQFINKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
    NCTC8325        MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
    Newman          MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
    USA300_FPR3757  MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
                    **********************:*************************************

    COL             VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
    N315            VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
    NCTC8325        VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
    Newman          VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
    USA300_FPR3757  VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
                    ************************************************************

    COL             SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
    N315            SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
    NCTC8325        SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
    Newman          SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
    USA300_FPR3757  SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
                    ************************************************************

    COL             IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
    N315            IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
    NCTC8325        IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
    Newman          IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
    USA300_FPR3757  IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
                    ************************************************************

    COL             CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
    N315            CQVPIAGYATISDQKEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
    NCTC8325        CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
    Newman          CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
    USA300_FPR3757  CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
                    **************:*********************************************

    COL             IKRLNEQH
    N315            IKRLNEQH
    NCTC8325        IKRLNEQH
    Newman          IKRLNEQH
    USA300_FPR3757  IKRLNEQH
                    ********