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Summary[edit source | edit]

  • pan ID?: SAUPAN004291000
  • symbol?: tig
  • description?: trigger factor

      descriptions from strain specific annotations:

    • trigger factor
    • Cell division trigger factor
    • trigger factor (prolyl isomerase)
    • Trigger factor, ppiase
    • trigger factor prolyl isomerase
    • trigger factor Tig
  • strand?: -
  • coordinates?: 4536238..4537548
  • synteny block?: BlockID0033150
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1722 (tig)
    N315:
    SA1499 (tig)
    NCTC8325:
    Newman:
    NWMN_1569 (tig)
    USA300_FPR3757:
    04-02981:
    SA2981_1635 (tig)
    08BA02176:
    C248_1716 (tig)
    11819-97:
    MS7_1683 (tig)
    71193:
    ST398NM01_1730
    ECT-R 2:
    ECTR2_1516 (tig)
    ED133:
    SAOV_1664 (tig)
    ED98:
    SAAV_1663 (tig)
    HO 5096 0412:
    SAEMRSA15_15860 (tig)
    JH1:
    SaurJH1_1767 (tig)
    JH9:
    SaurJH9_1733 (tig)
    JKD6008:
    SAA6008_01643 (tig)
    JKD6159:
    SAA6159_01600 (tig)
    LGA251:
    SARLGA251_15680 (tig)
    M013:
    M013TW_1689
    MRSA252:
    SAR1755 (tig)
    MSHR1132:
    SAMSHR1132_15030
    MSSA476:
    SAS1604 (tig)
    Mu3:
    SAHV_1662 (tig)
    Mu50:
    SAV1675 (tig)
    MW2:
    MW1619 (tig)
    RF122:
    SAB1535c (tig)
    ST398:
    SAPIG1730 (tig)
    T0131:
    SAT0131_01777
    TCH60:
    HMPREF0772_11475 (tig)
    TW20:
    SATW20_16660 (tig)
    USA300_TCH1516:
    USA300HOU_1667 (tig)
    VC40:
    SAVC_07585 (tig)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
    N315            MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
    NCTC8325        MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
    Newman          MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
    USA300_FPR3757  MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
                    ************************************************************

    COL             EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
    N315            EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
    NCTC8325        EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
    Newman          EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
    USA300_FPR3757  EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
                    ************************************************************

    COL             YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
    N315            YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
    NCTC8325        YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
    Newman          YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
    USA300_FPR3757  YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
                    ************************************************************

    COL             GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
    N315            GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
    NCTC8325        GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
    Newman          GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
    USA300_FPR3757  GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
                    ************************************************************

    COL             EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
    N315            EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
    NCTC8325        EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
    Newman          EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
    USA300_FPR3757  EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
                    ************************************************************

    COL             TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
    N315            TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
    NCTC8325        TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
    Newman          TIDIPEAMINTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
    USA300_FPR3757  TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
                    ********:***************************************************

    COL             LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
    N315            LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
    NCTC8325        LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
    Newman          LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
    USA300_FPR3757  LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
                    ************************************************************

    COL             RDNAKFVEGTKED
    N315            RDNAKFVEGTKED
    NCTC8325        RDNAKFVEGTKED
    Newman          RDNAKFVEGTKED
    USA300_FPR3757  RDNAKFVEGTKED
                    *************