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Summary[edit source | edit]

  • pan ID?: SAUPAN004303000
  • symbol?: thrS
  • description?: threonyl-tRNA synthetase

      descriptions from strain specific annotations:

    • threonyl-tRNA synthetase
    • threonine--tRNA ligase
    • threonyl-tRNA synthetase 1
  • strand?: -
  • coordinates?: 4542736..4544673
  • synteny block?: BlockID0033270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1729 (thrS)
    N315:
    SA1506 (thrS)
    NCTC8325:
    Newman:
    NWMN_1576 (thrS)
    USA300_FPR3757:
    04-02981:
    SA2981_1642 (thrS)
    08BA02176:
    C248_1724 (thrS)
    11819-97:
    MS7_1690 (thrS)
    71193:
    ST398NM01_1737
    ECT-R 2:
    ECTR2_1523 (thrS)
    ED133:
    SAOV_1671 (thrS)
    ED98:
    SAAV_1672 (thrS)
    HO 5096 0412:
    SAEMRSA15_15930 (thrS)
    JH1:
    SaurJH1_1774 (thrS)
    JH9:
    SaurJH9_1740 (thrS)
    JKD6008:
    SAA6008_01650 (thrS)
    JKD6159:
    SAA6159_01607 (thrS)
    LGA251:
    SARLGA251_15750 (thrS)
    M013:
    M013TW_1696
    MRSA252:
    SAR1762 (thrS)
    MSHR1132:
    SAMSHR1132_15100
    MSSA476:
    SAS1611 (thrS)
    Mu3:
    SAHV_1669 (thrS)
    Mu50:
    SAV1683 (thrS)
    MW2:
    MW1626 (thrS)
    RF122:
    SAB1542c (thrS)
    ST398:
    SAPIG1737 (thrS)
    T0131:
    SAT0131_01785
    TCH60:
    HMPREF0772_11468 (thrS)
    TW20:
    SATW20_16730 (thrS)
    USA300_TCH1516:
    USA300HOU_1669 (thrS)
    VC40:
    SAVC_07620 (thrS)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIE
    N315            MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIG
    NCTC8325        MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIE
    Newman          MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIE
    USA300_FPR3757  MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIE
                    *********************************************************** 

    COL             IVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFE
    N315            IVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFE
    NCTC8325        IVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFE
    Newman          IVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFE
    USA300_FPR3757  IVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFE
                    ************************************************************

    COL             QIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDL
    N315            QIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDL
    NCTC8325        QIEKTMKQIVNENMKIERKVVSRDEVKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDL
    Newman          QIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDL
    USA300_FPR3757  QIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDL
                    *************************.**********************************

    COL             CRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKE
    N315            CRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKE
    NCTC8325        CRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKE
    Newman          CRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKE
    USA300_FPR3757  CRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKE
                    ************************************************************

    COL             RDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLAN
    N315            RDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLAN
    NCTC8325        RDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLAN
    Newman          RDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLAN
    USA300_FPR3757  RDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLAN
                    ************************************************************

    COL             VDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAEL
    N315            VDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAEL
    NCTC8325        VDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAEL
    Newman          VDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAEL
    USA300_FPR3757  VDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAEL
                    ************************************************************

    COL             GTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF
    N315            GTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF
    NCTC8325        GTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF
    Newman          GTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF
    USA300_FPR3757  GTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF
                    ************************************************************

    COL             RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAM
    N315            RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAM
    NCTC8325        RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAM
    Newman          RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAM
    USA300_FPR3757  RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAM
                    ************************************************************

    COL             GKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFP
    N315            GKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFP
    NCTC8325        GKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFP
    Newman          GKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFP
    USA300_FPR3757  GKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFP
                    ************************************************************

    COL             TWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQ
    N315            TWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQ
    NCTC8325        TWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQ
    Newman          TWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQ
    USA300_FPR3757  TWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQ
                    ************************************************************

    COL             IVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR
    N315            IVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR
    NCTC8325        IVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR
    Newman          IVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR
    USA300_FPR3757  IVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR
                    *********************************************