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Summary[edit source | edit]

  • pan ID?: SAUPAN004319000
  • symbol?: citC
  • description?: isocitrate dehydrogenase

      descriptions from strain specific annotations:

    • isocitrate dehydrogenase
    • isocitrate dehydrogenase (NADP(+))
    • Isocitrate dehydrogenase (NADP)
    • isocitrate dehydrogenase, NADP-dependent
  • strand?: -
  • coordinates?: 4560480..4561748
  • synteny block?: BlockID0033430
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1741 (icd)
    N315:
    SA1517 (citC)
    NCTC8325:
    Newman:
    NWMN_1587 (citC)
    USA300_FPR3757:
    04-02981:
    SA2981_1653 (citC)
    08BA02176:
    C248_1736 (citC)
    11819-97:
    MS7_1701 (icd)
    71193:
    ST398NM01_1748
    ECT-R 2:
    ECTR2_1534 (icd)
    ED133:
    SAOV_1682 (citC)
    ED98:
    SAAV_1684 (icd)
    HO 5096 0412:
    SAEMRSA15_16040 (citC)
    JH1:
    SaurJH1_1785
    JH9:
    SaurJH9_1751
    JKD6008:
    SAA6008_01661 (citC)
    JKD6159:
    SAA6159_01618 (citC)
    LGA251:
    SARLGA251_15860 (citC)
    M013:
    M013TW_1707
    MRSA252:
    SAR1773 (citC)
    MSHR1132:
    SAMSHR1132_15450
    MSSA476:
    SAS1622
    Mu3:
    SAHV_1680 (citC)
    Mu50:
    SAV1694 (citC)
    MW2:
    MW1638 (citC)
    RF122:
    SAB1553c (citC)
    ST398:
    SAPIG1748 (icd)
    T0131:
    SAT0131_01796
    TCH60:
    HMPREF0772_11457 (icd)
    TW20:
    SATW20_16840 (citC)
    USA300_TCH1516:
    USA300HOU_1681 (icd)
    VC40:
    SAVC_07675

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
    N315            MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
    NCTC8325        MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
    Newman          MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
    USA300_FPR3757  MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
                    ************************************************************

    COL             LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
    N315            LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
    NCTC8325        LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
    Newman          LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
    USA300_FPR3757  LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
                    ************************************************************

    COL             VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
    N315            VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
    NCTC8325        VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
    Newman          VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
    USA300_FPR3757  VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
                    ************************************************************

    COL             PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
    N315            PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
    NCTC8325        PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
    Newman          PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
    USA300_FPR3757  PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
                    ************************************************************

    COL             SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
    N315            SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
    NCTC8325        SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
    Newman          SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
    USA300_FPR3757  SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
                    ************************************************************

    COL             VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
    N315            VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
    NCTC8325        VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
    Newman          VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
    USA300_FPR3757  VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
                    ************************************************************

    COL             VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
    N315            VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
    NCTC8325        VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
    Newman          VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
    USA300_FPR3757  VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
                    ************************************************************

    COL             LK
    N315            LK
    NCTC8325        LK
    Newman          LK
    USA300_FPR3757  LK
                    **