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Summary[edit source | edit]

  • pan ID?: SAUPAN004520000
  • symbol?:
  • description?: hypothetical protein
  • strand?: +
  • coordinates?: 4745373..4746144
  • synteny block?: BlockID0035110
  • occurrence?: in 97% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1758
    08BA02176:
    C248_1847
    11819-97:
    MS7_1801
    71193:
    ST398NM01_1871
    ECT-R 2:
    ECTR2_1637
    ED133:
    SAOV_1783
    ED98:
    SAAV_1812
    HO 5096 0412:
    SAEMRSA15_17100
    JH1:
    SaurJH1_1889
    JH9:
    SaurJH9_1853
    JKD6008:
    SAA6008_01778
    JKD6159:
    SAA6159_01720
    LGA251:
    M013:
    M013TW_1812
    MRSA252:
    SAR1883
    MSHR1132:
    SAMSHR1132_16470
    MSSA476:
    SAS1723
    Mu3:
    SAHV_1788
    Mu50:
    SAV1803
    MW2:
    MW1741
    RF122:
    SAB1657
    ST398:
    SAPIG1871
    T0131:
    SAT0131_01919
    TCH60:
    HMPREF0772_11354
    TW20:
    SATW20_17920
    USA300_TCH1516:
    USA300HOU_1790
    VC40:
    SAVC_08225

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MEKNEYIAKYNEYSQLLDATYSQAVAYLLSKYGAVTDDYYKEKSYTRFLNGEIKSISKGK
    N315            MEKNEYTAKYNEYSQLLDATYSQAVAYLLNKYGAVTDDYYKEKSYTRFLNGEIKSISKGK
    NCTC8325        MEKNEYIAKYNEYSQLLDATYSQAVAYLLSKYGAVTDDYYKEKSYTRFLNGEIKSISKGK
    Newman          MEKNEYIAKYNEYSQLLDATYSQAVAYLLSKYGAVTDDYYKEKSYTRFLNGEIKSISKGK
    USA300_FPR3757  MEKNEYIAKYNEYSQLLDATYSQAVAYLLSKYGAVTDDYYKEKSYTRFLNGEIKSISKGK
                    ****** **********************.******************************

    COL             YTRASEGLYCHHISEDKFQNLSDLRFISKFKYSYDVQKKENLVYCDLIEHLILHAIITKE
    N315            YTRASEGLYCHHISEDKFQNLSDLRFISEFKYSYNVQKKENLVYCDLIEHLILHAIITKE
    NCTC8325        YTRASEGLYCHHISEDKFQNLSDLRFISKFKYSYDVQKKENLVYCDLIEHLILHAIITKE
    Newman          YTRASEGLYCHHISEDKFQNLSDLRFISKFKYSYDVQKKENLVYCDLIEHLILHAIITKE
    USA300_FPR3757  YTRASEGLYCHHISEDKFQNLSDLRFISKFKYSYDVQKKENLVYCDLIEHLILHAIITKE
                    ****************************:*****:*************************

    COL             SHGQFGVAGLCQMIKPTVIDWYIGEYNPKPAWMQATKARAYLPGILVEKLLIKIDDMLKG
    N315            SNGQFGVAGLCQMIKPTVIDWYISEYTPKPAWMQATKARAYLPRILVEKLLIKIDDMLEG
    NCTC8325        SHGQFGVAGLCQMIKPTVIDWYIGEYNPKPAWMQATKARAYLPGILVEKLLIKIDDMLKG
    Newman          SHGQFGVAGLCQMIKPTVIDWYIGEYNPKPAWMQATKARAYLPGILVEKLLIKIDDMLKG
    USA300_FPR3757  SHGQFGVAGLCQMIKPTVIDWYIGEYNPKPAWMQATKARAYLPGILVEKLLIKIDDMLKG
                    *:*********************.**.**************** **************:*

    COL             IEI-------
    N315            IEIYDFLESR
    NCTC8325        IEI-------
    Newman          IEI-------
    USA300_FPR3757  IEI-------
                    ***