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Summary[edit source | edit]

  • pan ID?: SAUPAN004528000
  • symbol?:
  • description?: hypothetical protein
  • strand?: -
  • coordinates?: 4751319..4751888
  • synteny block?: BlockID0035190
  • occurrence?: in 56% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_1848
    11819-97:
    MS7_1802
    71193:
    ST398NM01_1872
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_17130
    JH1:
    JH9:
    JKD6008:
    SAA6008_01779
    JKD6159:
    SAA6159_01721
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    SAMSHR1132_16480
    MSSA476:
    SAS1724
    Mu3:
    Mu50:
    MW2:
    MW1742
    RF122:
    ST398:
    SAPIG1872
    T0131:
    SAT0131_01920
    TCH60:
    TW20:
    SATW20_17930
    USA300_TCH1516:
    USA300HOU_1791
    VC40:
    SAVC_08230

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MFTPIVINLLNDVGSIFLVRVGNQLKVIEKVHYEDILESKIVRLFQAFIKDKMDQLFITS
    NCTC8325        MFTPIVINLLNDVGSIFLVRVGNQLKVIEKVHYEDILESKIVRLFQAFIKDKMDQLFITS
    Newman          MFTPIVINLLNDVGSIFLVRVGNQLKVIEKVHYEDILESKIVRLFQAFIKDKMDQLFITS
    USA300_FPR3757  MFTPIVINLLNDVGSIFLVRVGNQLKVIEKVHYEDILESKIVRLFQAFIKDKMDQLFITS
                    ************************************************************

    COL             EHFAIDIDKLLFQLNLNVRYIKMEGNTSGYLSGRTIYINNNHSINNTRFSIARELGRYLF
    NCTC8325        EHFAIDIDKLLFQLNLNVRYIKMEGNTSGYLSGRTIYINNNHSINNTRFSIARELGRYLF
    Newman          EHFAIDIDKLLFQLNLNVRYIKMEGNTSGYLSGRTIYINNNHSINNTRFSIARELGRYLF
    USA300_FPR3757  EHFAIDIDKLLFQLNLNVRYIKMEGNTSGYLSGRTIYINNNHSINNTRFSIARELGRYLF
                    ************************************************************

    COL             KNTDLMRDSNDNSLKNLHEMIYESDVNQFSVDLLMPKKQIEALVYNFYEVNNINLSSGLS
    NCTC8325        KNTDLMRDSNDNSLKNLHEMIYESDVNQFSVDLLMPKKQIEALVYNFYEVNNINLSSGLS
    Newman          KNTDLMRDSNDNSLKNLHEMIYESDVNQFSVDLLMPKKQIEALVYNFYEVNNINLSSGLS
    USA300_FPR3757  KNTDLMRDSNDNSLKNLHEMIYESDVNQFSVDLLMPKKQIEALVYNFYEVNNINLSSGLS
                    ************************************************************

    COL             EKERNKLLNLISTKLEVSKVAAGLRLYNLGIHI
    NCTC8325        EKERNKLLNLISTKLEVSKVAAGLRLYNLGIHI
    Newman          EKERNKLLNLISTKLEVSKVAAGLRLYNLGIHI
    USA300_FPR3757  EKERNKLLNLISTKLEVSKVAAGLRLYNLGIHI
                    *********************************