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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN004549000
  • symbol?:
  • description?: probable exported protein

      descriptions from strain specific annotations:

    • probable exported protein
    • pseudogene
  • strand?: -
  • coordinates?: 4768223..4768531
  • synteny block?: BlockID0035390
  • occurrence?: in 56% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_1857
    11819-97:
    71193:
    ST398NM01_1881
    ECT-R 2:
    ED133:
    SAOV_1788
    ED98:
    HO 5096 0412:
    SAEMRSA15_17180
    JH1:
    JH9:
    JKD6008:
    SAA6008_01784
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1893
    MSHR1132:
    MSSA476:
    SAS1728
    Mu3:
    Mu50:
    MW2:
    MW1748
    RF122:
    ST398:
    SAPIG1881
    T0131:
    SAT0131_01925
    TCH60:
    HMPREF0772_11344
    TW20:
    SATW20_17990
    USA300_TCH1516:
    USA300HOU_1797
    VC40:
    SAVC_08260

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNKKYLMIVIIILILILGGIFLKMKYDEKKYYDEQKERITIYMKYNVKGYKNISFANFKE
    NCTC8325        ------MIVIIILILILGGIFLKMKYDEKKYYDEQKERITIYMKYNVKGYKNISFANFKE
    Newman          MNKKYLMIVIIILILILGGIFLKMKYDEKKYYDEQKERITIYMKYNVKGYKNISFANFKE
    USA300_FPR3757  MNKKYLMIVIIILILILGGIFLKMKYDEKKYYDEQKERITIYMKYNVKGYKNISFANFKE
                          ******************************************************

    COL             NPMDGYSISGYINNDKKLSFTAGIRSVDDFQFDTDISYTDELGRKFNKNPKSVSEIKKEQ
    NCTC8325        NPMDGYSISGYINNDKKLSFTAGIRSVDDFQFDTDISYTDELGRKFNKNPKSVSEIKKEQ
    Newman          NPMDGYSISGYINNDKKLSFTAGIRSVDDFQFDTDISYTDELGRKFNKNPKSVSEIKKEQ
    USA300_FPR3757  NPMDGYSISGYINNDKKLSFTAGIRSVDDFQFDTDISYTDELGRKFNKNPKSVSEIKKEQ
                    ************************************************************

    COL             NTSNK
    NCTC8325        NTSNK
    Newman          NTSNK
    USA300_FPR3757  NTSNK
                    *****