PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004559000
• symbol^?: splD
• synonym:
• description^?: serine protease SplD

  descriptions from strain specific annotations:

  • serine protease SplD
  • serine protease
  • serine proteinase
  • pseudogene
  • serine protease SplB
  • serine protease SplD, putative
  • serine protease splF
• strand^?: -
• coordinates^?: 4790600..4795518
• synteny block^?: BlockID0035480
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL1866
N315:
SA1628 (splD)
NCTC8325:
SAOUHSC_01938
Newman:
NWMN_1703 (splD)
USA300_FPR3757:
SAUSA300_1755 (splD)
04-02981:
SA2981_1765 (splD)
08BA02176:
—
11819-97:
MS7_1810
6850:
RSAU_001667 (splE)
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_1818
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_16940 (splD)
M013:
—
MRSA252:
SAR1903
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_1795 (splD)
Mu50:
SAV1810 (splD)
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_11332 (splB3)
TW20:
SATW20_18080 (splD)
USA300_TCH1516:
USA300HOU_1803 (splD)
VC40:
SAVC_08290

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKNIIIKSIAALTILTSITGVGTTVVDGIQQTAKAENSVKLITNTNVAPYSGVTWMGAG
  N315            MNKNIIIKSIAALTILTSITGVGTTVVDGIQQTAKAENSVKLITNTNVAPYSGVTWMGAG
  NCTC8325        MNKNIIIKSIAALTILTSITGVGTTVVDGIQQTAKAENSVKLITNTNVAPYSGVTWMGAG
  Newman          MNKNIIIKSIAALTILTSITGVGTTVVDGIQQTAKAENSVKLITNTNVAPYSGVTWMGAG
  USA300_FPR3757  MNKNIIIKSIAALTILTSITGVGTTVVDGIQQTAKAENSVKLITNTNVAPYSGVTWMGAG
                  ************************************************************
  
  COL             TGFVVGNQTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  N315            TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  NCTC8325        TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  Newman          TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  USA300_FPR3757  TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
                  *******:****************************************************
  
  COL             EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  N315            EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  NCTC8325        EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  Newman          EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  USA300_FPR3757  EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
                  ************************************************************
  
  COL             VTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK
  N315            VTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK
  NCTC8325        VTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK
  Newman          VTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK
  USA300_FPR3757  VTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK
                  ***********************************************************