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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN004577000
  • symbol?: epiC
  • description?: pseudogene

      descriptions from strain specific annotations:

    • pseudogene
    • lantibiotic epidermin biosynthesis protein EpiC
    • epidermin biosynthesis protein EpiC, authentic point mutation
    • lantibiotic biosynthesis protein
    • lanthionine synthetase C-like family protein
    • Epidermin biosynthesis protein epiC
  • strand?: -
  • coordinates?: 4809143..4819619
  • synteny block?: BlockID0035600
  • occurrence?: in 44% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1876 (epiC)
    N315:
    NCTC8325:
    Newman:
    NWMN_1714 (bsaC)
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    MS7_1821
    71193:
    ECT-R 2:
    ED133:
    SAOV_1805
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    LGA251:
    SARLGA251_17040
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS1744
    Mu3:
    Mu50:
    MW2:
    MW1763 (bsaC)
    RF122:
    SAB1681c
    ST398:
    T0131:
    SAT0131_01942
    TCH60:
    TW20:
    SATW20_18180
    USA300_TCH1516:
    USA300HOU_1813 (epiC)
    VC40:
    SAVC_08340

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    NCTC8325        MIDMNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGIILFLDAYQKVFDINTE
    Newman          MIDMNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGIILFLDAYQKVFDINTE
    USA300_FPR3757  MIDMNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGIILFLDAYQKVFDINTE
                    ************************************************************

    NCTC8325        QIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGKNYQNILNNIDGHIVNEIE
    Newman          QIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGKNYQNILNNIDGHIVNEIE
    USA300_FPR3757  QIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGKNYQNILNNIDGHIVNEIE
                    ************************************************************

    NCTC8325        NKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNVKALKSILVYFKDIQYSKNSW
    Newman          NKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNVKALKSILVYFKDIQYSKNSW
    USA300_FPR3757  NKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNVKALKSILVYFKDIQYSKNSW
                    ************************************************************

    NCTC8325        VVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFALCVIKGITIENHQHILKDMYKFI
    Newman          VVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFALCVIKGITIENHQHILKDMYKFI
    USA300_FPR3757  VVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFALCVIKGITIENHQHILKDMYKFI
                    ************************************************************

    NCTC8325        MDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNTGVMTTLFLIGQALQDDEIIKMSKK
    Newman          MDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNTGVMTTLFLIGQALQDDEIIKMSKK
    USA300_FPR3757  MDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNTGVMTTLFLIGQALQDDEIIKMSKK
                    ************************************************************

    NCTC8325        VMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVSDYITVLINKLISHYKEDY
    Newman          VMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVSDYITVLINKLISHYKEDY
    USA300_FPR3757  VMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVSDYITVLINKLISHYKEDY
                    ************************************************************

    NCTC8325        LVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTKILNEKNWTNAFLIS
    Newman          LVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTKILNEKNWTNAFLIS
    USA300_FPR3757  LVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTKILNEKNWTNAFLIS
                    ******************************************************