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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN005025000
  • symbol?: truncated lytA
  • description?: truncated amidase

      descriptions from strain specific annotations:

    • truncated amidase
    • truncated phage amidase
  • strand?: -
  • coordinates?: 5196938..5197192
  • synteny block?: BlockID0039060
  • occurrence?: in 9% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1904
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    VC40:

Genome Viewer[edit source | edit]

N315 chromosome
Newman chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    N315            MLA------------IDTLFALHSI---------NISQQHRNITVATPHLKWCGYFYWKC
    Newman          MISFLPFTRYIYLNNIEILQSLHRILNGVVIFIGSVYQ----VSVMLKHQLKMKRIH-QC
                    *::            *: * :** *         .: *    ::*   *      :: :*

    N315            VSGISNVKTPAKNEKNSPVPAGYTLDKNNDRIKKRLVITQLPMLKVIT
    Newman          QQVIHSI-------------------KTMYRIKKRLVITQLPMLKVIT
                     . * .:                   *.  ******************