PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005045000
• symbol^?: —
• synonym:
• description^?: bacteriophage minor structural protein

  descriptions from strain specific annotations:

  • bacteriophage minor structural protein
  • phage minor structural protein
  • phi77 ORF002-like protein, phage minor structural protein
  • phage minor structural , N-terminal region domain protein
  • phage minor structural protein, N-terminal region domain protein
  • phage protein
  • phi PVL ORF 20 and 21 homologue
  • phi PVL ORF 20 and 21-like protein
  • Structural protein, phage associated
• strand^?: -
• coordinates^?: 5205546..5209404
• synteny block^?: BlockID0039230
• occurrence^?: in 73% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1764
NCTC8325:
SAOUHSC_02180
Newman:
NWMN_1886
USA300_FPR3757:
SAUSA300_1928
04-02981:
SA2981_1914
08BA02176:
—
11819-97:
MS7_1985
6850:
RSAU_000611
71193:
ST398NM01_2917
ECT-R 2:
ECTR2_1825
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18680
JH1:
SaurJH1_2044
JH9:
SaurJH9_2008
JKD6008:
SAA6008_02006
JKD6159:
SAA6159_01882
LGA251:
—
M013:
—
MRSA252:
SAR2048
MSHR1132:
SAMSHR1132_17930
MSSA476:
SAS1876
Mu3:
SAHV_1939
Mu50:
SAV1953
MW2:
MW1893
RF122:
—
ST398:
—
T0131:
SAT0131_02085
TCH60:
HMPREF0772_11188
TW20:
SATW20_19450
USA300_TCH1516:
USA300HOU_1957
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MIHVLDFNDKIIDFLSTDDPSLVRAIHKRNVNDNSEMLELLISSERAEKFRERHRVIIRD
  NCTC8325        MIHVLDFNDKIIDFLSTDDPSLVRAIHKRNVNDNSEMLELLISSERAEKFRERHRVIIRD
  Newman          MIHVLDFNDKIIDFLSTDDPSLVRAIHKRNVNDNSEMLELLISSERAEKFRKRHRVIIRD
  USA300_FPR3757  MIHVLDFNDKIIDFLSTDDPSLVRAIHKRNVNDNSEMLELLISSERAEKFRERHRVIIRD
                  ***************************************************:********
  
  N315            SNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPGKFEKKTTSEALKDVLSDT
  NCTC8325        SNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPGKFEKKTTSEALKDVLSDT
  Newman          SNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPGKFEKKTTSEALKDVLSDT
  USA300_FPR3757  SNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPGKFEKKTTSEALKDVLSDT
                  ************************************************************
  
  N315            GWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMVLDFYIELSSNTVKGRYVVLKKK
  NCTC8325        GWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMALDFYIELSSNTVKGRYVVLKKK
  Newman          GWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMVLDFYIELSSNTVKGRYVVLKKK
  USA300_FPR3757  GWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMVLDFYIELSSNTVKGRYVVLKKK
                  *************************************.**********************
  
  N315            NSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPENDKGKRLELVVTDDEAQSQFNLP
  NCTC8325        NSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPENDKGKRLELVVTDDEAQSQFNLP
  Newman          NSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPENDKGKRLELVVTDDEAQSQFNLP
  USA300_FPR3757  NSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPENDKGKRLELVVTDDEAQSQFNLP
                  ************************************************************
  
  N315            MRYIWGIYEPQSDDQNMNETRLSSLAKTELNKRKSAVMSYEITSTDLEVTYPHEIISIGD
  NCTC8325        TRYIWGIYEPQSDDQNMNETRLRSLAKTELNKRKSAVMSYEITSTDLEVTYPHEIISIGD
  Newman          MRYIWGIYEPQSDDQNMNETRLSSLAKTELNKRKSAVMSYEITSTDLEVTYPHEIISIGD
  USA300_FPR3757  MRYIWGIYEPQSDDQNMNETRLSSLAKTELNKRKSAVMSYEITSTDLEVTYPHEIISIGD
                   ********************* *************************************
  
  N315            TVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYTFGQPKEFKESELREEFNKRLNLIHQK
  NCTC8325        TVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYTFGQPKEFKESELREEFNKRLNIIHQK
  Newman          TVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYTFGQPKEFKESELREEFNKRLNLIHQK
  USA300_FPR3757  TVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYTFGQPKEFKESELREEFNKRLNLIHQK
                  *******************************************************:****
  
  N315            LNDNISNINTIVKDVVDGELEYFERKIHKSDTPPENPVNDMLWYDTSNPDVAVLRRYWNG
  NCTC8325        LNDNISNINTIVKDVVDGELEYFERKIHKNDTPPENPVNDMLWYDTSNPDVAVLRRYWNG
  Newman          LNDNISNINTIVKDIVDGELEYFERKIHKSDTPPENPVNDTLWYDTSNPDVAVLRRYWNG
  USA300_FPR3757  LNDNISNINTIVKDVVDGELEYFERKIHKSDTPPENPVNDTLWYDTSNPDVAVLRRYWNG
                  **************:**************.********** *******************
  
  N315            RWIEATPNDVEKLGGITREKALFSELNNIFINLSIQHASLLSEATELLNSEYLVDNDLKA
  NCTC8325        RWIEATPNDVEKLGGITREKALFSELNNIFINLSIQHASLLSEATELLNSEYLVDNDLKA
  Newman          RWIEATPNDVEKLGGITREKALFSELNNIFINLSIQHASLLSEATELLNSEYLVDNDLKA
  USA300_FPR3757  RWIEATPNDVEKLGGITREKALFSELNNIFINLSIQHASLLSEATELLNSEYLVDNDLKA
                  ************************************************************
  
  N315            DLQASLDAVIDVYNQIKNNLESMTPETATIGRLVDTQALFLEYRKKLQDVYTDVEDVKIA
  NCTC8325        DLQASLDAVIDVYNQIKNNLESMTPETATIGRLVDTQALFLEYRKKLQDVYTDVEDVKIA
  Newman          DLQASLDAVIDVYNQIKNNLESMTPETATIGRLVDTKTLFLEYRKKLQDVYTDVEDVKIA
  USA300_FPR3757  DLQASLDAVIDVYNQIKNNLESMTPETATIGRLVDTKTLFLEYRKKLQDVYTDVEDVKIA
                  ************************************::**********************
  
  N315            ISDRFKLLQSQYTDEKYKEALEIIATKFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQL
  NCTC8325        ISDRFKLLQSQYTDEKYKEALEIIATKFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQL
  Newman          ISDRFKLLQSQYTDEKYKEALEIIATKFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQL
  USA300_FPR3757  ISDRFKLLQSQYTDEKYKEALEIIATKFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQL
                  ************************************************************
  
  N315            RDYVKTSDYKTDKDGIVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSD
  NCTC8325        RDYVKTSDYKTDKDGIVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSD
  Newman          RDYVKTSDYKTDKDGIVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSD
  USA300_FPR3757  RDYVKTSDYKTDKDGIVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSD
                  ************************************************************
  
  N315            LSNNPEIKASIEQANQEAQEALKSYIDAQDDLKEKESQAYADGKISEEEQRAIQDAQAKL
  NCTC8325        LSNNPEIKASIEQANQEAQEALKSYIDAQDNLKEKESQAYADGKISEEEQRAIQDAQAKL
  Newman          LSNNPEIKASIEQANQEAQEALKSYIDAQDDLKEKESQAYADGKISEEEQRAIQDAQAKL
  USA300_FPR3757  LSNNPEIKASIEQANQEAQEALKSYIDAQDNLKEKESQAYADGKISEEEQRAIQDAQAKL
                  ******************************:*****************************
  
  N315            EEAKQNAELKARNAEKKANAYTDNKVKESTDAQRKTLTRYGSQIIQNGKEIKLRTTKEEF
  NCTC8325        EEAKQNAELKARNAEKKANAYTDNKVKESTDAQRRTLTRYGSQIIQNGKEIKLRTTKEEF
  Newman          EEAKQNAELKARNAEKKANVYTDNKVKESTDAQRKTLTRYGSQIIQNGKEIKLRTTKEEF
  USA300_FPR3757  EEAKQNAELKARNAEKKANAYTDNKVKESTDAQRRTLTRYGSQIIQNGKEIKLRTTKEEF
                  *******************.**************:*************************
  
  N315            NASKRTLSRLLADITVNAMKGIYLRYDENGAITSHTIDKDGVKISGDKVDITANREFNVV
  NCTC8325        NATNRTLSNILNEIVQNVTDGTTIRYDDNGVAQALNVGPRGIRLNADKIDINGNREINLL
  Newman          NATNRTLSNILNEIVQNVTDGTTIRYDDNGVAQALNVGPRGIRLNADKIDINGNREINLL
  USA300_FPR3757  NATNRTLSNILNEIVQNVTDGTTIRYDDNGVAQALNVGPRGIRLNADKIDINGNREINLL
                  **::****.:* :*. *. .*  :***:**.  : .:.  *:::..**:**..***:*::
  
  N315            ANNINNKVGKNDIVNSLNLSNEGLDINVNRIGIKGGNANRYVQVQNDFIELGGIVQRTWK
  NCTC8325        IQNMRDKVDKTDIVNSLNLSREGLDINVNRIGIKGGNNNRYVQIQNDSIELGGIVQRTWK
  Newman          IQNMRDKVDKTDIVNSLNLSREGLDINVNRIGIKGGDNNRYVQIQNDSIELGGIVQRTWR
  USA300_FPR3757  IQNMRDKVDKTDIVNSLNLSREGLDINVNRIGIKGGNNNRYVQIQNDSIELGGIVQRTWK
                   :*:.:**.*.*********.***************: *****:*** ***********:
  
  N315            GKRSTDDIFTRLKDGHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYS
  NCTC8325        GKRSTDDIFTRLKDGHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYS
  Newman          GKRSTDDIFTRLKDGHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYS
  USA300_FPR3757  GKRSTDDIFTRLKDGHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYS
                  ************************************************************
  
  N315            DSGMNGITINSYGGVVALTSDYNRIIIDSYASANIESREAPIYLSPNTKNKPGLNRFAFT
  NCTC8325        DSGMNGITINSYGGVVALTSDNNRVVLESYASSNIKSKQAPVYLYPNTDKVPGLNRFAFT
  Newman          DSGMNGITINSYGGVVALTSDNNRVVLESYASSNIKSKQAPVYLYPNTDKVPGLNRFAFT
  USA300_FPR3757  DSGMNGITINSYGGVVALTSDNNRVVLESYASSNIKSKQAPVYLYPNTDKVPGLNRFAFT
                  ********************* **::::****:**:*::**:** ***.: *********
  
  N315            LSNADSAYETDGYIMFGSDENYKYGAGLRFSKRSNKGLVQVVNGDYATGGDTTIESGMGK
  NCTC8325        LSNADNAYSSDGYIMFGSDENYDYGAGIRFSKERNKGLVQIVNGRYATGGDTTIEAGYGK
  Newman          LSNADNAYSSDGYIMFGSDENYDYGAGIRFSKERNKGLVQIVNGRYATGGDTTIEAGYGK
  USA300_FPR3757  LSNADNAYSSDGYIMFGSDENYDYGAGIRFSKERNKGLVQIVNGRYATGGDTTIEAGYGK
                  *****.**.:************.****:****. ******:*** **********:* **
  
  N315            FNLVKRRDGNSYVSIQSYDLLAVGSDNAGDRVASNSIYKRTYSAPANLHITSAGTIGRAT
  NCTC8325        FNMLKRRDGNRYIHIQSTDLLSVGSDDAGDRIASNSIYRRTYSAAANLHITSAGTIGRST
  Newman          FNMLKRRDGNRYIHIQSTDLLSVGSDDAGDRIASNSIYRRTYSAAANLHITSAGTIGRST
  USA300_FPR3757  FNMLKRRDGNRYIHIQSTDLLSVGSDDAGDRIASNSIYRRTYSAAANLHITSAGTIGRST
                  **::****** *: *** ***:****:****:******:*****.*************:*
  
  N315            SAKKYKISIENQYINEDDQFSHSKEILKLPIRTWFDKYESEIMAKELESGKKLSDDTFKL
  NCTC8325        SARKYKLSIENQYNDRDEQLEHSKAILNLPIRTWFDKAESEILARELREDRKLSEDTYKL
  Newman          SARKYKLSIENQYNDRDEQLEHSKAILNLPIRTWFDKAESEILARELREDRKLSEDTYKL
  USA300_FPR3757  SARKYKLSIENQYNDRDEQLEHSKAILNLPIRTWFDKAESEILARELREDRKLSEDTYKL
                  **:***:****** :.*:*:.*** **:********* ****:*:**...:***:**:**
  
  N315            SRHTGLIAEEVEELGFNEFVIYDDNGEIEGIAYDRLWVHLIPIIKNQQSKIEKLEELINE
  NCTC8325        DRYVGLIAEEVENLGLKEFVTYDDKGEIEGIAYDRLWIHLIPVIKEQQLRIKKLEESKNA
  Newman          DRYVGLIAEEVENLGLKEFVTYDDKGEIEGIAYDRLWIHLIPVIKEQQLRIKKLEESKNA
  USA300_FPR3757  DRYVGLIAEEVENLGLKEFVTYDDKGEIEGIAYDRLWIHLIPVIKEQQLRIKKLEESKNA
                  .*:.********:**::*** ***:************:****:**:** :*:****  * 
  
  N315            -
  NCTC8325        G
  Newman          G
  USA300_FPR3757  G