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Summary[edit source | edit]

  • pan ID?: SAUPAN005303000
  • symbol?: ilvD
  • description?: dihydroxy-acid dehydratase

      descriptions from strain specific annotations:

    • dihydroxy-acid dehydratase
    • putative dihydroxy-acid dehydratase
  • strand?: +
  • coordinates?: 5463807..5465495
  • synteny block?: BlockID0041030
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2042 (ilvD)
    N315:
    SA1858 (ilvD)
    NCTC8325:
    Newman:
    NWMN_1960 (ilvD)
    USA300_FPR3757:
    04-02981:
    SA2981_1994 (ilvD)
    08BA02176:
    C248_2059 (ilvD)
    11819-97:
    MS7_2065 (ilvD)
    71193:
    ST398NM01_2092
    ECT-R 2:
    ECTR2_1904 (ilvD)
    ED133:
    SAOV_2090
    ED98:
    SAAV_2101 (ilvD)
    HO 5096 0412:
    SAEMRSA15_19610 (ilvD)
    JH1:
    SaurJH1_2127
    JH9:
    SaurJH9_2090
    JKD6008:
    SAA6008_02091 (ilvD)
    JKD6159:
    SAA6159_01966 (ilvD)
    LGA251:
    SARLGA251_18560 (ilvD)
    M013:
    M013TW_2006
    MRSA252:
    SAR2140 (ilvD)
    MSHR1132:
    SAMSHR1132_18750
    MSSA476:
    SAS1958
    Mu3:
    SAHV_2038 (ilvD)
    Mu50:
    SAV2053 (ilvD)
    MW2:
    MW1977 (ilvD)
    RF122:
    SAB1938
    ST398:
    SAPIG2092 (ilvD)
    T0131:
    SAT0131_02206
    TCH60:
    HMPREF0772_11145 (ilvD)
    TW20:
    SATW20_21930 (ilvD)
    USA300_TCH1516:
    USA300HOU_2048 (ilvD)
    VC40:
    SAVC_09145

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYIDIVPGHVHLRELADIAK
    N315            MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYIDIVPGHVHLRELADIAK
    NCTC8325        MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYIDIVPGHVHLRELADIAK
    Newman          MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYIDIVPGHVHLRELADIAK
    USA300_FPR3757  MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYIDIVPGHVHLRELADIAK
                    ************************************************************

    COL             EAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPN
    N315            EAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPN
    NCTC8325        EAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPN
    Newman          EAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPN
    USA300_FPR3757  EAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPN
                    ************************************************************

    COL             CDKITPGMILAAMRTNVPAIFCSGGPMKAGLSAHGKALTLSSMFEAVGAFKEGSISKEEF
    N315            CDKITPGMILAAMRTNVPAIFCSGGPMKAGLSAHGKALTLSSMFEAVGAFKEGSISKEEF
    NCTC8325        CDKITPGMILAAMRTNVPAIFCSGGPMKAGLSAHGKALTLSSMFEAVGAFKEGSISKEEF
    Newman          CDKITPGMILAAMRTNVPAIFCSGGPMKAGLSAHGKALTLSSMFEAVGAFKEGSISKEEF
    USA300_FPR3757  CDKITPGMILAAMRTNVPAIFCSGGPMKAGLSAHGKALTLSSMFEAVGAFKEGSISKEEF
                    ************************************************************

    COL             LDMEQNACPTCGSCAGMFTANSMNCLMEVLGLALPYNGTALAVSDQRREMIRQAAFKLVE
    N315            LDMEQNACPTCGSCAGMFTANSMNCLMEVLGLALPYNGTALAVSDQRREMIRQAAFKLVE
    NCTC8325        LDMEQNACPTCGSCAGMFTANSMNCLMEVLGLALPYNGTALAVSDQRREMIRQAAFKLVE
    Newman          LDMEQNACPTCGSCAGMFTANSMNCLMEVLGLALPYNGTALAVSDQRREMIRQAAFKLVE
    USA300_FPR3757  LDMEQNACPTCGSCAGMFTANSMNCLMEVLGLTLPYNGTALAVSDQRREMIRQAAFKLVE
                    ********************************:***************************

    COL             NIKNDLKPRDIVTREAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLERINAIAKRT
    N315            NIKNDLKPRDIVTREAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLERINAIAKRT
    NCTC8325        NIKNDLKPRDIVTREAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLERINAIAKRT
    Newman          NIKNDLKPRDIVTREAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLERINAIAKRT
    USA300_FPR3757  NIKNDLKPRDIVTREAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLERINAIAKRT
                    ************************************************************

    COL             PYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRITVTGKTLRENNEGKEIKN
    N315            PYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRITVTGKTLRENNEGKEIKN
    NCTC8325        PYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRITVTGKTLRENNEGKEIKN
    Newman          PYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRITVTGKTLRENNEGKEIKN
    USA300_FPR3757  PYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRITVTGKTLRENNEGKEIKN
                    ************************************************************

    COL             FDVIHPLDAPYDAQGGLSILFGNIAPKGAVIKVGGVDPSIKTFTRKAICFNSHDEAVEAI
    N315            FDVIHPLDAPYDAQGGLSILFGNIAPKGAVIKVGGVDPSIKTFTGKAICFNSHDEAVEAI
    NCTC8325        FDVIHPLDAPYDAQGGLSILFGNIAPKGAVIKVGGVDPSIKTFTGKAICFNSHDEAVEAI
    Newman          FDVIHPLDAPYDAQGGLSILFGNIAPKGAVIKVGGVDPSIKTFTRKAICFNSHDEAVEAI
    USA300_FPR3757  FDVIHPLDAPYDAQGGLSILFGNIAPKGAVIKVGGVDPSIKTFTGKAICFNSHDEAVEAI
                    ******************************************** ***************

    COL             DNRTVRAGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAV
    N315            DNRTVRAGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAV
    NCTC8325        DNRTVRAGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAV
    Newman          DNRTVRAGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAV
    USA300_FPR3757  DNRTVRAGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAV
                    ************************************************************

    COL             GHISPEAASGGPIALIEDGDEITIDLTNRTLNVNQPEDVLARRRESLTPFKAKVKTGYLA
    N315            GHISPEAASGGPIALIEDGDEITIDLTNRTLNVNQPEDVLARRRESLTPFKAKVKTGYLA
    NCTC8325        GHISPEAASGGPIALIEDGDEITIDLTNRTLNVNQPEDVLARRRESLTPFKAKVKTGYLA
    Newman          GHISPEAASGGPIALIEDGDEITIDLTNRTLNVNQPEDVLARRRESLTPFKAKVKTGYLA
    USA300_FPR3757  GHISPEAASGGPIALIEDGDEITIDLTNRTLNVNQPEDVLARRRESLTPFKAKVKTGYLA
                    ************************************************************

    COL             RYTALVTSANTGGVMQVPENLI
    N315            RYTALVTSANTGGVMQVPENLI
    NCTC8325        RYTALVTSANTGGVMQVPENLI
    Newman          RYTALVTSANTGGVMQVPENLI
    USA300_FPR3757  RYTALVTSANTGGVMQVPENLI
                    **********************