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Summary[edit source | edit]

  • pan ID?: SAUPAN005341000
  • symbol?: alr
  • description?: alanine racemase

      descriptions from strain specific annotations:

    • alanine racemase
    • alanine racemase 1
  • strand?: -
  • coordinates?: 5515635..5516753
  • synteny block?: BlockID0041380
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2060 (alr)
    N315:
    SA1874 (alr)
    NCTC8325:
    Newman:
    NWMN_1975 (alr)
    USA300_FPR3757:
    04-02981:
    SA2981_2011 (alr)
    08BA02176:
    C248_2082 (alr)
    11819-97:
    MS7_2087 (alr)
    71193:
    ST398NM01_2111
    ECT-R 2:
    ECTR2_1926 (alr)
    ED133:
    SAOV_2112c (alr_1)
    ED98:
    SAAV_2123 (alr)
    HO 5096 0412:
    SAEMRSA15_19800 (alr)
    JH1:
    SaurJH1_2145
    JH9:
    SaurJH9_2107
    JKD6008:
    SAA6008_02109 (alr)
    JKD6159:
    SAA6159_01985 (alr)
    LGA251:
    SARLGA251_18730 (alr)
    M013:
    M013TW_2029
    MRSA252:
    SAR2158 (alr)
    MSHR1132:
    SAMSHR1132_18950
    MSSA476:
    SAS1975
    Mu3:
    SAHV_2055 (alr)
    Mu50:
    SAV2070 (alr)
    MW2:
    MW1994 (alr)
    RF122:
    SAB1955c (alr)
    ST398:
    SAPIG2111 (alr)
    T0131:
    SAT0131_02227 (rocD)
    TCH60:
    HMPREF0772_11125 (alr)
    TW20:
    SATW20_22100 (alr)
    USA300_TCH1516:
    USA300HOU_2065 (alr2)
    VC40:
    SAVC_09235

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGAT
    N315            MSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGAT
    NCTC8325        MSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGAT
    Newman          MSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGAT
    USA300_FPR3757  MSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGAT
                    ************************************************************

    COL             FFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISG
    N315            FFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISG
    NCTC8325        FFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISG
    Newman          FFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISG
    USA300_FPR3757  FFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISG
                    ************************************************************

    COL             EQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT
    N315            EQEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT
    NCTC8325        EQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT
    Newman          EQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT
    USA300_FPR3757  EQEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT
                    ************************:***********************************

    COL             EQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVH
    N315            EQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVH
    NCTC8325        EQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVH
    Newman          EQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVH
    USA300_FPR3757  EQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVH
                    ************************************************************

    COL             LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVN
    N315            LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVN
    NCTC8325        LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVN
    Newman          LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVN
    USA300_FPR3757  LKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVN
                    ************************************************************

    COL             GHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNL
    N315            GHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNL
    NCTC8325        GHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNL
    Newman          GHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNL
    USA300_FPR3757  GHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNL
                    ************************************************************

    COL             SRRLPRIYHDGDQRFVTNELLK
    N315            SRRLPRIYHDGDQRFVTNELLK
    NCTC8325        SRRLPRIYHDGDQRFVTNELLK
    Newman          SRRLPRIYHDGDQRFVTNELLK
    USA300_FPR3757  SRRLPRIYHDGDQRFVTNELLK
                    **********************