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Summary[edit source | edit]

  • pan ID?: SAUPAN005403000
  • symbol?: upp
  • description?: uracil phosphoribosyltransferase
  • strand?: -
  • coordinates?: 5563842..5564471
  • synteny block?: BlockID0041990
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2104 (upp)
    N315:
    SA1914 (upp)
    NCTC8325:
    Newman:
    NWMN_2016 (upp)
    USA300_FPR3757:
    04-02981:
    SA2981_2052 (upp)
    08BA02176:
    C248_2126 (upp)
    11819-97:
    MS7_2128 (upp)
    71193:
    ST398NM01_2154
    ECT-R 2:
    ECTR2_1968 (upp)
    ED133:
    SAOV_2153c (upp)
    ED98:
    SAAV_2167 (upp)
    HO 5096 0412:
    SAEMRSA15_20200 (upp)
    JH1:
    SaurJH1_2186 (upp)
    JH9:
    SaurJH9_2148 (upp)
    JKD6008:
    SAA6008_02150 (upp)
    JKD6159:
    SAA6159_02026 (upp)
    LGA251:
    SARLGA251_19130 (upp)
    M013:
    M013TW_2071
    MRSA252:
    SAR2200 (upp)
    MSHR1132:
    SAMSHR1132_19350
    MSSA476:
    SAS2015 (upp)
    Mu3:
    SAHV_2096 (upp)
    Mu50:
    SAV2112 (upp)
    MW2:
    MW2036 (upp)
    RF122:
    SAB1996c (upp)
    ST398:
    SAPIG2154 (upp)
    T0131:
    SAT0131_02274 (appF)
    TCH60:
    HMPREF0772_11079 (upp)
    TW20:
    SATW20_22500 (upp)
    USA300_TCH1516:
    USA300HOU_2102 (upp)
    VC40:
    SAVC_09435 (upp)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVT
    N315            MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVT
    NCTC8325        MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVT
    Newman          MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVT
    USA300_FPR3757  MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVT
                    ************************************************************

    COL             KMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQ
    N315            KMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQ
    NCTC8325        KMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQ
    Newman          KMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQ
    USA300_FPR3757  KMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQ
                    ************************************************************

    COL             DITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIY
    N315            DITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIY
    NCTC8325        DITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIY
    Newman          DITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIY
    USA300_FPR3757  DITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIY
                    ************************************************************

    COL             IAALDEKLNDKAYITPGLGDAGDRLFGTK
    N315            IAALDEKLNDKAYITPGLGDAGDRLFGTK
    NCTC8325        IAALDEKLNDKAYITPGLGDAGDRLFGTK
    Newman          IAALDEKLNDKAYITPGLGDAGDRLFGTK
    USA300_FPR3757  IAALDEKLNDKAYITPGLGDAGDRLFGTK
                    *****************************