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Summary[edit source | edit]

  • pan ID?: SAUPAN005427000
  • symbol?:
  • description?: DUF2750 domain-containing protein

      descriptions from strain specific annotations:

    • DUF2750 domain-containing protein
    • pseudogene
  • strand?: -
  • coordinates?: 5585469..5586141
  • synteny block?: BlockID0042220
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2071
    08BA02176:
    C248_2146
    11819-97:
    MS7_2149
    71193:
    ST398NM01_2173
    ECT-R 2:
    ECTR2_1987
    ED133:
    SAOV_2172c
    ED98:
    SAAV_2186
    HO 5096 0412:
    SAEMRSA15_20390
    JH1:
    SaurJH1_2205
    JH9:
    SaurJH9_2167
    JKD6008:
    SAA6008_02169
    JKD6159:
    SAA6159_02045
    LGA251:
    SARLGA251_19320
    M013:
    M013TW_2090
    MRSA252:
    SAR2219
    MSHR1132:
    SAMSHR1132_19540
    MSSA476:
    SAS2034
    Mu3:
    SAHV_2115
    Mu50:
    SAV2131
    MW2:
    MW2055
    RF122:
    SAB2015c
    ST398:
    SAPIG2173
    T0131:
    SAT0131_02295 (ppnK)
    TCH60:
    HMPREF0772_11059
    TW20:
    SATW20_22690
    USA300_TCH1516:
    USA300HOU_2120
    VC40:
    SAVC_09530

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSYKAYPFFRDILINECIYFASKNKKLVRLNYKSEAYVGVWTEESVAVSFLTSRDIPFDK
    N315            MSYKAYPFFRDILINECIYFASKNKKLVRLNYKSEAYVGVWTEESVAVSFLTSRDIPFDK
    NCTC8325        MSYKAYPFFRDILINECIYFASKNKKLVRLNYKSEAYVGVWTEESVAVSFLTSRDIPFDK
    Newman          MSYKAYPFFRDILINECIYFASKNKKLVRLNYKSEAYVGVWTEESVAVSFLTSRDIPFDK
    USA300_FPR3757  MSYKAYPFFRDILINECIYFASKNKKLVRLNYKSEAYVGVWTEESVAVSFLTSRDIPFDK
                    ************************************************************

    COL             VVKMDVDRFATYELDELFDEQDHIIMNQTMEEEGHLLNVVAVTQEVMTELDKIRIKEFVQ
    N315            VVKMDVDRFATYELDELFDEQDHIIMNQTMEEEGHLLNVVAVTQEVMTELDKIRIKEFVQ
    NCTC8325        VVKMDVDRFATYELDELFDEQDHIIMNQTMEEEGHLLNVVAVTQEVMTELDKIRIKEFVQ
    Newman          VVKMDVDRFATYELDELFDEQDHIIMNQTMEEEGHLLNVVAVTQEVMTELDKIRIKEFVQ
    USA300_FPR3757  VVKMDVDRFATYELDELFDEQDHIIMNQTMEEEGHLLNVVAVTQEVMTELDKIRIKEFVQ
                    ************************************************************

    COL             DVAKYDEVYGLTKKGSKQFILISENDSDEKKPHIMPVWSIKNRALKVRDEDFEECDLITI
    N315            DVAKYDEVYGLTKKGSKQFILISENDSDEKKPHIMPVWSIKNRALKVRDEDFEECDLITI
    NCTC8325        DVAKYDEVYGLTKKGSKQFILISENDSDEKKPHIMPVWSIKNRALKVRDEDFEECDLITI
    Newman          DVAKYDEVYGLTKKGSKQFILISENDSDEKKPHIMPVWSIKNRALKVRDEDFEECDLITI
    USA300_FPR3757  DVAKYDEVYGLTKKGSKQFILISENDSDEKKPHIMPVWSIKNRALKVRDEDFEECDLITI
                    ************************************************************

    COL             EGSVFGEWLDELRDDHKAVAIDLKTGVVGTIVSAQKLSNELTF
    N315            EGSVFGEWLDELRDDHKAVAIDLKTGVVGTIVSAQKLSNELTF
    NCTC8325        EGSVFGEWLDELRDDHKAVAIDLKTGVVGTIVSAQKLSNELTF
    Newman          EGSVFGEWLDELRDDHKAVAIDLKTGVVGTIVSAQKLSNELTF
    USA300_FPR3757  EGSVFGEWLDELRDDHKAVAIDLKTGVVGTIVSAQKLSNELTF
                    *******************************************