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Summary[edit source | edit]

  • pan ID?: SAUPAN005432000
  • symbol?: pdp
  • description?: pyrimidine-nucleoside phosphorylase

      descriptions from strain specific annotations:

    • pyrimidine-nucleoside phosphorylase
    • putative pyrimidine-nucleoside phosphorylase
    • pyrimidine-nucleoside phosphorylase (pynp)
    • thymidine phosphorylase
  • strand?: -
  • coordinates?: 5590507..5591808
  • synteny block?: BlockID0042270
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2128 (pdp)
    N315:
    SA1938 (pdp)
    NCTC8325:
    Newman:
    NWMN_2040 (pdp)
    USA300_FPR3757:
    04-02981:
    SA2981_2076 (pdp)
    08BA02176:
    C248_2152 (pyn)
    11819-97:
    MS7_2154 (pdp)
    71193:
    ST398NM01_2178
    ECT-R 2:
    ECTR2_1992 (pdp)
    ED133:
    SAOV_2176c (pyn)
    ED98:
    SAAV_2191 (pdp)
    HO 5096 0412:
    SAEMRSA15_20440 (pyn)
    JH1:
    SaurJH1_2210
    JH9:
    SaurJH9_2172
    JKD6008:
    SAA6008_02174 (pdp)
    JKD6159:
    SAA6159_02050 (pdp)
    LGA251:
    SARLGA251_19370 (pyn)
    M013:
    M013TW_2096
    MRSA252:
    SAR2224 (pyn)
    MSHR1132:
    SAMSHR1132_19590
    MSSA476:
    SAS2039
    Mu3:
    SAHV_2120 (pdp)
    Mu50:
    SAV2136 (pdp)
    MW2:
    MW2060 (pdp)
    RF122:
    SAB2020c (pyn)
    ST398:
    SAPIG2178
    T0131:
    SAT0131_02300
    TCH60:
    HMPREF0772_11054 (pdp)
    TW20:
    SATW20_22740 (pyn)
    USA300_TCH1516:
    USA300HOU_2125 (pdp)
    VC40:
    SAVC_09555

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
    N315            MRMIDIIEKKRDGHTLTTEEINFFIDGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
    NCTC8325        MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
    Newman          MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
    USA300_FPR3757  MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
                    *************************.**********************************

    COL             AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
    N315            AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
    NCTC8325        AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
    Newman          AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
    USA300_FPR3757  AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
                    ************************************************************

    COL             IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
    N315            IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
    NCTC8325        IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
    Newman          IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
    USA300_FPR3757  IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
                    ************************************************************

    COL             ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
    N315            ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
    NCTC8325        ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
    Newman          ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
    USA300_FPR3757  ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
                    ************************************************************

    COL             QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
    N315            QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
    NCTC8325        QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
    Newman          QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
    USA300_FPR3757  QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
                    ************************************************************

    COL             NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
    N315            NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
    NCTC8325        NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
    Newman          NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
    USA300_FPR3757  NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
                    ************************************************************

    COL             LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
    N315            LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
    NCTC8325        LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
    Newman          LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
    USA300_FPR3757  LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
                    ************************************************************

    COL             VVSPTLIHKIITE
    N315            VVSPTLIHKIITE
    NCTC8325        VVSPTLIHKIITE
    Newman          VVSPTLIHKIITE
    USA300_FPR3757  VVSPTLIHKIITE
                    *************