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Summary[edit source | edit]

  • pan ID?: SAUPAN005600000
  • symbol?:
  • description?: pseudogene
  • strand?: -
  • coordinates?: 5735921..5737687
  • synteny block?: BlockID0043600
  • occurrence?: in 56% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_2238
    11819-97:
    71193:
    ST398NM01_2258
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_21030
    JH1:
    JH9:
    JKD6008:
    SAA6008_02239
    JKD6159:
    SAA6159_02110
    LGA251:
    M013:
    MRSA252:
    SAR2289
    MSHR1132:
    MSSA476:
    SAS2100
    Mu3:
    Mu50:
    MW2:
    MW2125
    RF122:
    SAB2079c
    ST398:
    SAPIG2258
    T0131:
    TCH60:
    HMPREF0772_10993
    TW20:
    SATW20_23360
    USA300_TCH1516:
    USA300HOU_2191
    VC40:
    SAVC_09880

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MCFDINNLDIKKLNFRKVKNAIHLSLSGDKYQFLEDGKTINNTYFLAVYDNAINIFEDLF
    NCTC8325        MCFDINNLDIKKLNFRKVKNAIHLSLSGDKYQFLEDGKTINNTYFLAVYDNAINIFEDLF
    Newman          MCFDINNLDIKKLNFRKVKNAIHLSLSGDKYQFLEDGKTINNTYFLAVYDNAINIFEDLF
    USA300_FPR3757  ----------------------------------------------------------MF
                                                                              :*

    COL             SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
    NCTC8325        SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
    Newman          SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
    USA300_FPR3757  SPSDSINLVHVVYVYSEPYKKTNVIKKFTSLTIDELYYFKEYKKEKDDNILCEEFSYKCS
                    ************************************************************

    COL             IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
    NCTC8325        IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
    Newman          IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
    USA300_FPR3757  IKDIKYKKLLKAISNQDFKGLVPNINQNDNYSEIYIINNTKNLIYHLYDDRGLWLAFNNN
                    ************************************************************

    COL             EDYARYSEKYNDLISEFDNEDI
    NCTC8325        EDYARYSEKYNDLISEFDNEDI
    Newman          EDYARYSEKYNDLISEFDNEDI
    USA300_FPR3757  EDYARYSEKYNDLISEFDNEDI
                    **********************