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Summary[edit source | edit]

  • pan ID?: SAUPAN005624000
  • symbol?: budA1
  • description?: alpha-acetolactate decarboxylase
  • strand?: -
  • coordinates?: 5760475..5761179
  • synteny block?: BlockID0043770
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2198 (budA1)
    N315:
    NCTC8325:
    Newman:
    NWMN_2110 (alsD)
    USA300_FPR3757:
    04-02981:
    SA2981_2143
    08BA02176:
    C248_2249
    11819-97:
    MS7_2234
    71193:
    ST398NM01_2267
    ECT-R 2:
    ECTR2_2067 (budA)
    ED133:
    SAOV_2251c
    ED98:
    SAAV_2267 (budA1)
    HO 5096 0412:
    SAEMRSA15_21130
    JH1:
    SaurJH1_2275
    JH9:
    SaurJH9_2236
    JKD6008:
    SAA6008_02247 (budA1)
    JKD6159:
    SAA6159_02118 (budA1)
    LGA251:
    SARLGA251_20000
    M013:
    M013TW_2173
    MRSA252:
    SAR2296
    MSHR1132:
    SAMSHR1132_20370
    MSSA476:
    SAS2105
    Mu3:
    SAHV_2190
    Mu50:
    SAV2206
    MW2:
    MW2131
    RF122:
    SAB2086c
    ST398:
    SAPIG2267 (budA)
    T0131:
    SAT0131_02382
    TCH60:
    HMPREF0772_10985 (budA2)
    TW20:
    SATW20_23440
    USA300_TCH1516:
    USA300HOU_2201 (alsD)
    VC40:
    SAVC_09920

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             ----MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHA
    N315            ----MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHA
    NCTC8325        ----MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHA
    Newman          MGDFMTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHA
    USA300_FPR3757  ----MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHA
                        ********************************************************

    COL             NEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISG
    N315            NEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISG
    NCTC8325        NEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISG
    Newman          NEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISG
    USA300_FPR3757  NEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISG
                    ************************************************************

    COL             LFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHF
    N315            LFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHF
    NCTC8325        LFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHF
    Newman          LFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHF
    USA300_FPR3757  LFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHF
                    ************************************************************

    COL             ANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDKDFTKANIDYKDIADEIREAE
    N315            ANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDKDFTKANIDYKDIADEIREAE
    NCTC8325        ANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDKDFTKANIDYKDIADEIREAE
    Newman          ANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDKDFTKANIDYKDIADEIREAE
    USA300_FPR3757  ANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDKDFTKANIDYKDIADEIREAE
                    **********************************************************