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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN005636000
  • symbol?:
  • description?: hypothetical protein
  • strand?: -
  • coordinates?: 5765286..5777495
  • synteny block?: BlockID0043890
  • occurrence?: in 28% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_02249
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02384 (purL)
    TCH60:
    TW20:
    SATW20_23460
    USA300_TCH1516:
    USA300HOU_2204
    VC40:
    SAVC_09930

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
    NCTC8325        MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
    Newman          MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
    USA300_FPR3757  MNNSNFLNVELIGTKIITMEDFYKMKEEEFFLKSKLPLYLYSFNYVDEYTMKLLDRGRIS
                    ************************************************************

    COL             ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
    NCTC8325        ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
    Newman          ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
    USA300_FPR3757  ILNTKTNKDCIFDISKYIHENIIFRRDIFELNDIRDDDLKYKINGYNIEVYLSGELEKIV
                    ************************************************************

    COL             KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
    NCTC8325        KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
    Newman          KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
    USA300_FPR3757  KHLFENKFDVEYGFYILFIKPIFEIVFSSNYVKEEFNTKIESSEYRESLDSFNEILMKYL
                    ************************************************************

    COL             ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKT
    NCTC8325        ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKN
    Newman          ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKT
    USA300_FPR3757  ENEINFKEVWKKYIDELFKKLNVQKLLIHKKIESLISSYDKKISDDCSMYSKVFEQYKKN
                    ***********************************************************.

    COL             LYWIK-------------------------------------------------------
    NCTC8325        VVLDKVYYSEVYKYSDNLIKVFSEDVWNIMGYKKYNEYFTNRDDTTLKITNLYIGQSFGT
    Newman          LYWIK-------------------------------------------------------
    USA300_FPR3757  VVLDKVYYSEVYKYSDNLIKVFSEDVWNIMGYKKYNEYFTNRDDTTLKITNLYIGQSFGT
                    :   *                                                       

    COL             ------------------------------------------------------------
    NCTC8325        EGNRNVIDRIGKGHEKLQEIMTYQPENRKTVLIFYKIQPDNIYITNQYGKEAVSRLKRIL
    Newman          ------------------------------------------------------------
    USA300_FPR3757  EGNRNVIDRIGKGHEKLQEIMTYQPENRKTVLIFYKIQPDNIYITNQYGKEAVSRLKRIL
                                                                                

    COL             ------------------------------------------------------YITLKF
    NCTC8325        EQSIPNKEYIDLSEISLITFFKPEYNKQHVNEEFNSLSSSKIKNLAKENDGIIIYLNFKD
    Newman          ------------------------------------------------------YITLKF
    USA300_FPR3757  EQSIPNKEYIDLSEISLITFFKPEYNKQHVNEEFNSLSSSKIKNLAKENDGIIIYLNFKD
                                                                          *:.:* 

    COL             INIVII------------------------------------------
    NCTC8325        VNYQLISEGNTFFSAKPYLHCVFNKDILNMDKVDIENFFKSIEVKYSK
    Newman          INIVII------------------------------------------
    USA300_FPR3757  VNYQLISEGNTFFSAKPYLHCVFNKDILNMDKVDIENFFKSIEVKYSK
                    :*  :*