Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
Contents
⊟Summary[edit source | edit]
- pan ID?: SAUPAN005650000
- symbol?: —
- description?: pseudogene
- strand?: -
- coordinates?: 5779620..5781809
- synteny block?: BlockID0044000
- occurrence?: in 28% of 32 strains
⊟Orthologs[edit source | edit]
04-02981:
—
08BA02176:
—
11819-97:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02253
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02388 (purH)
TCH60:
—
TW20:
SATW20_23490
USA300_TCH1516:
USA300HOU_2207
VC40:
SAVC_09950
⊟Genome Viewer[edit source | edit]
COL chromosome | |
NCTC8325 chromosome | |
Newman chromosome | |
USA300_FPR3757 chromosome |
⊟Alignments[edit source | edit]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.205)
NCTC8325 MRGDQRTQGEKSRKEGGKIFGSGSRAPIAISILVKDGSYNHDIYYNDIGEYLTREQKLDT
Newman MRGDQRTQGEKSRKEGGKIFGSGSRAPIAISILVKDGSYNHDIYYNDIGEYLTREQKLDT
************************************************************
NCTC8325 LMKHQSIVNLKSLNVLPDKNNDWINQRDINYENYLPMYDSKDIENSIYLDQFNGVNSARD
Newman LMKHQSIVNLKSLNVLPDKNNDWINQRDINYENYLPMYDSKDIENSIYLDQFNGVNSARD
************************************************************
NCTC8325 NWVTNFSNEKALVNAKLLVDNYNSEIDRLIDILDSRERINLVNKDETFISWTRGLTQKFS
Newman NWVTNFSNEKALVNAKLLVDNYNSEIDRLIDILDSRERINLVNKDETFISWTRGLTQKFS
************************************************************
NCTC8325 KGKNISINPERIVKFMHRPFTKKWIVYDKNIMEMPSRYYNIMENTGQVIYIQGQGMNKEF
Newman KGKNISINPERIVKFMHRPFTKKWIVYDKNIMEMPSRYYNIMENTGQVIYIQGQGMNKEF
************************************************************
NCTC8325 SAMITDILPNFQFIGNGKGFATYKGKDSLRLVDNISNSFKKKINLNSEEIVYYIYAILHH
Newman SAMITDILPNFQFIGNGKGFATYKGKDSLRLVDNISNSFKKKINLNSEEIVYYIYAILHH
************************************************************
NCTC8325 KYYVNKYSSDLSKGFPRIPILKDVYGFVEIGRELVELHLNYEKQLNWDGVEIIYNNMNPN
Newman KYYVNKYSSDLSKGFPRIPILKDVYGFVEIGRELVELHLNYEKQLNWDGVEIIYNNMNPN
************************************************************
NCTC8325 YKVEK
Newman YKVEK
*****