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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005676000
- symbol?: rpoA
- synonym:
- description?: DNA-directed RNA polymerase subunit alpha
- DNA-directed RNA polymerase subunit alpha
- DNA-directed RNA polymerase, subunit alpha
- DNA-directed RNA polymerase, alpha subunit
- DNA-directed RNA polymerase alpha subunit
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5797783..5798727
- synteny block?: BlockID0044220
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2162 (rpoA)
08BA02176:
C248_2260 (rpoA)
11819-97:
MS7_2244 (rpoA)
6850:
RSAU_002060 (rpoA)
71193:
ST398NM01_2277
ECT-R 2:
ECTR2_2086 (rpoA)
ED133:
SAOV_2262c
ED98:
SAAV_2286 (rpoA)
HO 5096 0412:
SAEMRSA15_21230 (rpoA)
JH1:
SaurJH1_2292
JH9:
SaurJH9_2251
JKD6008:
SAA6008_02261 (rpoA)
JKD6159:
SAA6159_02131 (rpoA)
LGA251:
SARLGA251_20100 (rpoA)
M013:
M013TW_2184
MRSA252:
SAR2309 (rpoA)
MSHR1132:
SAMSHR1132_20500
MSSA476:
SAS2115
Mu3:
SAHV_2208 (rpoA)
Mu50:
SAV2224 (rpoA)
MW2:
MW2143 (rpoA)
RF122:
SAB2097c (rpoA)
ST398:
SAPIG2277 (rpoA)
T0131:
SAT0131_02397
TCH60:
HMPREF0772_10974 (rpoA)
TW20:
SATW20_23580 (rpoA)
USA300_TCH1516:
USA300HOU_2215 (rpoA)
VC40:
SAVC_09990
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG
N315 MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG
NCTC8325 MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG
Newman MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG
USA300_FPR3757 MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG
************************************************************
COL VLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEI
N315 VLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEI
NCTC8325 VLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEI
Newman VLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEI
USA300_FPR3757 VLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEI
************************************************************
COL LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
N315 LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
NCTC8325 LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
Newman LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
USA300_FPR3757 LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
************************************************************
COL ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
N315 ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
NCTC8325 ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
Newman ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
USA300_FPR3757 ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
************************************************************
COL EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK
N315 EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK
NCTC8325 EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK
Newman EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK
USA300_FPR3757 EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK
************************************************************
COL YKLEDLGLGLRKED
N315 YKLEDLGLGLRKED
NCTC8325 YKLEDLGLGLRKED
Newman YKLEDLGLGLRKED
USA300_FPR3757 YKLEDLGLGLRKED
**************