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Summary[edit source | edit]

  • pan ID?: SAUPAN005845000
  • symbol?: fni
  • description?: isopentenyl pyrophosphate isomerase

      descriptions from strain specific annotations:

    • isopentenyl pyrophosphate isomerase
    • Isopentenyl-diphosphate delta-isomerase, FMN-dependent
    • isopentenyl-diphosphate delta-isomerase
    • isopentenyl-diphosphate delta-isomerase, type 2
  • strand?: -
  • coordinates?: 5922280..5923329
  • synteny block?: BlockID0045900
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2341 (fni)
    N315:
    SA2136 (fni)
    NCTC8325:
    Newman:
    NWMN_2247 (idi)
    USA300_FPR3757:
    04-02981:
    SA2981_2285 (fni)
    08BA02176:
    C248_2389 (fni)
    11819-97:
    MS7_2364 (fni)
    71193:
    ST398NM01_2398
    ECT-R 2:
    ECTR2_2206 (fni)
    ED133:
    SAOV_2389c
    ED98:
    SAAV_2410 (fni)
    HO 5096 0412:
    SAEMRSA15_22440 (fni)
    JH1:
    SaurJH1_2416
    JH9:
    SaurJH9_2370
    JKD6008:
    SAA6008_02383 (fni)
    JKD6159:
    SAA6159_02250 (fni)
    LGA251:
    SARLGA251_21280 (fni)
    M013:
    M013TW_2303
    MRSA252:
    SAR2431 (fni)
    MSHR1132:
    SAMSHR1132_21700
    MSSA476:
    SAS2237
    Mu3:
    SAHV_2330 (fni)
    Mu50:
    SAV2346 (fni)
    MW2:
    MW2267 (fni)
    RF122:
    SAB2225c (fni)
    ST398:
    SAPIG2398 (fni)
    T0131:
    SAT0131_02532
    TCH60:
    HMPREF0772_10848 (fni)
    TW20:
    SATW20_24770 (fni)
    USA300_TCH1516:
    USA300HOU_2327
    VC40:
    SAVC_10590

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
    N315            MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
    NCTC8325        MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
    Newman          MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
    USA300_FPR3757  MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
                    ************************************************************

    COL             VYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
    N315            IYINAMTGGSEWTKNINEKLAVVARETRLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
    NCTC8325        VYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
    Newman          VYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
    USA300_FPR3757  VYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
                    :************************** ********************************

    COL             IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
    N315            IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
    NCTC8325        IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
    Newman          IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
    USA300_FPR3757  IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
                    ************************************************************

    COL             VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
    N315            VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
    NCTC8325        VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
    Newman          VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
    USA300_FPR3757  VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
                    ************************************************************

    COL             TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
    N315            TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
    NCTC8325        TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
    Newman          TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
    USA300_FPR3757  TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
                    ************************************************************

    COL             YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEILSWIEQRNLNIHRG
    N315            YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEIMSWIEQRSLNIHRG
    NCTC8325        YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEILSWIEQRNLNIHRG
    Newman          YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEILSWIEQRNLNIHRG
    USA300_FPR3757  YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEILSWIEQRNLNIHRG
                    ***********************************:******.******