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Summary[edit | edit source]

  • pan ID?: SAUPAN005855000
  • symbol?:
  • synonym:
  • description?: TetR family transcriptional regulator

      descriptions from strain specific annotations:

    • TetR family transcriptional regulator
    • TetR/AcrR family transcriptional regulator
    • transcriptional regulator TetR family protein
    • bacterial regulatory s, tetR family protein
    • regulatory proteins, tetR family protein
    • regulatory protein TetR family
    • TetR family regulatory protein of MDR cluster
    • transcriptional regulator
  • strand?: +
  • coordinates?: 5931456..5932007
  • synteny block?: BlockID0046000
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2293
    08BA02176:
    C248_2398
    11819-97:
    MS7_2372
    6850:
    RSAU_002188
    71193:
    ST398NM01_2406
    ECT-R 2:
    ECTR2_2214
    ED133:
    SAOV_2397
    ED98:
    SAAV_2418
    HO 5096 0412:
    SAEMRSA15_22520
    JH1:
    SaurJH1_2424
    JH9:
    SaurJH9_2378
    JKD6008:
    SAA6008_02391
    JKD6159:
    SAA6159_02258
    LGA251:
    SARLGA251_21360
    M013:
    M013TW_2311
    MRSA252:
    SAR2439
    MSHR1132:
    SAMSHR1132_21790
    MSSA476:
    SAS2245
    Mu3:
    SAHV_2338
    Mu50:
    SAV2354
    MW2:
    MW2275
    RF122:
    SAB2233
    ST398:
    SAPIG2406
    T0131:
    SAT0131_02541
    TCH60:
    HMPREF0772_10840
    TW20:
    SATW20_24850
    USA300_TCH1516:
    USA300HOU_2336
    VC40:
    SAVC_10630

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
    N315            MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
    NCTC8325        MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
    Newman          MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
    USA300_FPR3757  MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHK
                    ************************************************************

    COL             EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
    N315            EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
    NCTC8325        EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
    Newman          EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
    USA300_FPR3757  EKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYIN
                    ************************************************************

    COL             LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
    N315            LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
    NCTC8325        LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
    Newman          LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
    USA300_FPR3757  LARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIK
                    ************************************************************

    COL             LQ-N
    N315            LQIQ
    NCTC8325        LQ-N
    Newman          LQ-N
    USA300_FPR3757  LQ-N
                    ** :