From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN005867000
  • symbol?:
  • description?: pseudogene

      descriptions from strain specific annotations:

    • pseudogene
    • transposase, truncation
    • putative transposase
    • putative transposase for IS1272
    • transposase (fragment)
    • truncated transposase for IS1272
  • strand?: +
  • coordinates?: 5939889..5940359
  • synteny block?: BlockID0046120
  • occurrence?: in 31% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_02396
    JKD6159:
    LGA251:
    SARLGA251_21410
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02546 (ermA-3)
    TCH60:
    TW20:
    SATW20_24900
    USA300_TCH1516:
    USA300HOU_2341
    VC40:
    SAVC_10660

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    NCTC8325        MIQNTFGYLPEYIVADACYDSEQNYMAIIDDFNKTPLITYVMFIKDKTRKFKSDIFNTQN
    Newman          MIQNTFGYLPEYIVADACYDSEQNYMAIIDDFNKTPLITYVMFIKDKTRKFKSDIFNTQN
    USA300_FPR3757  MIQNTFGYLPEYIVADACYDSEQNYMAIIDDFNKTPLITYVMFIKDKTRKFKSDIFNTQN
                    ************************************************************

    NCTC8325        WKYDELNDEFICPNNKRIGFKRYAYHNDRYGFKRDFKLYECNELYIIKYISKKLISIK
    Newman          WKYDELNDEFICPNNKRIGFKRYAYHNDRYGFKRDFKLYECNELYIIKYISKKLISIK
    USA300_FPR3757  WKYDELNDEFICPNNKRIGFKRYAYHNDRYGFKRDFKLYECNELYIIKYISKKLISIK
                    **********************************************************