From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN005913000
  • symbol?: sarZ
  • synonym:
  • description?: transcriptional regulator

      descriptions from strain specific annotations:

    • transcriptional regulator
    • MarR family transcriptional regulator
    • accessory protein Z
    • MarR family regulatory protein
    • transcriptional regulator, putative
    • HTH-type transcriptional regulator SarZ
    • HTH-type transcriptional regulator SarZ (Staphylococcal accessoryregulator Z)
    • marR family protein
    • staphylococcal accessory protein Z
    • transcriptional regulator MarR family
    • Transcriptional regulator SarZ (Staphylococcal accessory regulator Z)
  • strand?: +
  • coordinates?: 5981759..5982232
  • synteny block?: BlockID0046570
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    SACOL2384 (sarZ)
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2323 (sarZ)
    08BA02176:
    C248_2433
    11819-97:
    MS7_2403 (sarZ)
    6850:
    RSAU_002224
    71193:
    ST398NM01_2439
    ECT-R 2:
    ECTR2_2245
    ED133:
    SAOV_2432
    ED98:
    SAAV_2451 (sarZ)
    HO 5096 0412:
    SAEMRSA15_22850
    JH1:
    SaurJH1_2457
    JH9:
    SaurJH9_2410
    JKD6008:
    SAA6008_02425
    JKD6159:
    SAA6159_02289
    LGA251:
    SARLGA251_21700 (sarZ)
    M013:
    M013TW_2346
    MRSA252:
    SAR2474
    MSHR1132:
    SAMSHR1132_22140
    MSSA476:
    SAS2276
    Mu3:
    SAHV_2370
    Mu50:
    SAV2386
    MW2:
    MW2306
    RF122:
    SAB2265
    ST398:
    SAPIG2439
    T0131:
    SAT0131_02576
    TCH60:
    HMPREF0772_10802 (sarZ)
    TW20:
    SATW20_25160 (sarZ)
    USA300_TCH1516:
    USA300HOU_2368
    VC40:
    SAVC_10795

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MYVENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGE
    N315            MYVENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGE
    NCTC8325        MYVENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGE
    Newman          MYVENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGE
    USA300_FPR3757  MYVENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGE
                    ************************************************************

    COL             RVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF
    N315            RVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF
    NCTC8325        RVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF
    Newman          RVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF
    USA300_FPR3757  RVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF
                    ************************************************************

    COL             NISEREASDIINNLRNFVSKNFDYSDKK
    N315            NISEREASDIINNLRNFVSKNFDYSDRK
    NCTC8325        NISEREASDIINNLRNFVSKNFDYSDKK
    Newman          NISEREASDIINNLRNFVSKNFDYSDKK
    USA300_FPR3757  NISEREASDIINNLRNFVSKNFDYSDKK
                    **************************:*